Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g289 ATGGAAAAACTAGGTGACGATGAACTGGGTTTGATAATCAACTGGGTTCATGATCATAATGACAGAAGATCAATTTCTCAAGTATGCAAGCAATGGTTACGGGTAGAGGGTCAAACCCGGTTATATATACGTGTTCTAGAAGCTGAAGTTCTCCATAATTTCTTACCAAGGTTCCCAAATTTAGTGACATTCCAAGCCTCAGGATTAATCTGCAACGCCCACCTCGAATGTGTTGCCCAAACATGTCCCAAGATCGAGGTTCTCAACCTAAATACTCGAAAAATGCATGATGATTTGGATGAATCTGATGAGTTATCAGGCTTAAATGGTGGTATACATGCAATTGCAAATGGGTGTCGGGAATTACGGAAGGTTTATTTGAGAAGAAGGGGGATTGGTAATTTTGGGGTTGTTTCTCTTCTGAACTTTGGAAAAAACCTGACAGAGTTGGATTTGGGACGATGCAATAGAATTACTGATCAAGCTCTTGAAGCCATTGGGTATGCAACTTCTCTCTGTGTCTTGAATCTGCGGTGTTGTTGGTTGATCACGGATTCAGGGTTGGCGATGTTGGCAAATGGGTCTACAGCCAGGACTCTGAAAAAACTGATTATTGCAGAATGTGAGCGCATCACAGACTATGGGCTGTCGTGTTTGCAGCAGATGTGCTGTTTGGAGGAGTTGAATCTGGCAGAATGTGGACCGGCGGTGACTGACATCGGAGGTGTGGCAGTCGCTTCAATTCCTACTCTCAAGTGGTTGAACTTGTCGTGGTTGATAAACATATCGGACGTTACTCTGACCGCCATTGCTGAGCATTCCCAGAAGTTAATGGTGCTTGATTTAACAGGCTGTGAATTAATCACGGGAGAAGGGGTTCGTGCGTTTGTAGATCATGAATCCCTGGAAGAGCTTGTGCTGGTTTCCTGTGTCAATGTTTTTCAGTCTGATGTGGAACTTCTGGTTCTGGGGAGCCAGTCCCTGAAGTACATCAAGCTAGATAAACGTCTCAGAATGTGGATTCCGATTGCTACACAAGAGAATATCAGCAGATTCTGTAGGTTGGATTGGACTTCCTGA 1080 44.07 MEKLGDDELGLIINWVHDHNDRRSISQVCKQWLRVEGQTRLYIRVLEAEVLHNFLPRFPNLVTFQASGLICNAHLECVAQTCPKIEVLNLNTRKMHDDLDESDELSGLNGGIHAIANGCRELRKVYLRRRGIGNFGVVSLLNFGKNLTELDLGRCNRITDQALEAIGYATSLCVLNLRCCWLITDSGLAMLANGSTARTLKKLIIAECERITDYGLSCLQQMCCLEELNLAECGPAVTDIGGVAVASIPTLKWLNLSWLINISDVTLTAIAEHSQKLMVLDLTGCELITGEGVRAFVDHESLEELVLVSCVNVFQSDVELLVLGSQSLKYIKLDKRLRMWIPIATQENISRFCRLDWTS* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2777824 2778904 + Vvi4g289 Vvi4g289 785068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g289 359 Pfam F-box 4 40 IPR041567 -
Vvi4g289 359 PANTHER OS03G0633100 PROTEIN 1 334 - -
Vvi4g289 359 Gene3D Ribonuclease Inhibitor 183 351 IPR032675 -
Vvi4g289 359 Pfam Leucine Rich repeat 170 192 IPR001611 GO:0005515
Vvi4g289 359 Pfam Leucine Rich repeat 146 166 IPR001611 GO:0005515
Vvi4g289 359 Pfam Leucine Rich repeat 273 296 IPR001611 GO:0005515
Vvi4g289 359 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 1 334 - -
Vvi4g289 359 Gene3D - 1 40 - -
Vvi4g289 359 SUPERFAMILY RNI-like 78 334 - -
Vvi4g289 359 SMART LRR_CC_2 170 194 IPR006553 -
Vvi4g289 359 SMART LRR_CC_2 197 222 IPR006553 -
Vvi4g289 359 SMART LRR_CC_2 274 299 IPR006553 -
Vvi4g289 359 SMART LRR_CC_2 144 169 IPR006553 -
Vvi4g289 359 SMART LRR_CC_2 119 143 IPR006553 -
Vvi4g289 359 SMART LRR_CC_2 248 273 IPR006553 -
Vvi4g289 359 Gene3D Ribonuclease Inhibitor 98 181 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g289 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - vvi:100854453 721.079
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g289 Blo01g01776 . . . . Bpe02g00168 . Bma01g02556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017226 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6