Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g30 ATGGCGCGTGTTCTCTCGCACGCTTCCCCCCTTCCCTGCCCCTCACCTCCATCCGCCGCCTTCGTCTCCAATCTGAGCTTCTCTCATTCTTCGATCCCTTTCCAAATCTCTTCTCCTTCTCCGAAATCTTCTATATTCGGTGCGGCGTTTCGTCTCGTGTGCCGAGAAAATGAGCGGTTTTCGAAACGGTTTGGCAGGATTTTGGCTTCGCAGAGGGGGTACCGGAAGCTGCGGCGGCGGCCGGCCAAGAGTAAGGCAAAGGAGTTGGAGCTCGGCGTCAAGATTTGCATCGAAGAAGAACTGCCTGACGATCCTGAAATTTTGAATATTGCAGAGATGCTTCGTCTAGATGTTCCAATAGCAATGAAGTTAGCATTTGAAGGTATAAAAGATTCAGAGTATAAAACAAGAGATACTACAATAAGTGATCTTGGTGGGTTTGAAAATGTTGAGTTGTCTGTACTTCTTTGCAATGATGAGTTCATTCGCAAACTCAACAAAGAATGGAGGGATGAGGACCATGCCACTGATGTTCTGTCCATGTCACAACATATACCTGAACTTAAGCTTCCAATTCTTATGTTAGGGGACATTGTAATCTCTGTTGAGACTGCTGCAAGACAAGCAGAAGAAAGAGGTCATACCCTTCTTGATGAGATACGCATCCTCATGGTCCATGGGTTGTTGCATCTTTTGGGATTTGATCACGAGATTAGTGATGAGGCCGAAGTGGAAATGGAAAAGGAGGAAGAACTTCTTTTGAAGAGTCTTGGGTGGAAGGGGAAAGGTTTGATTCAGAGTGCATATGATGCTGAAACTGATGGCAATTCTCATACAGAAAATTCAGATGACAGGAAAAAAGAAGGTAGTCTACGTTTCTATAAACCAAAGTTCAGCTATATCTTCTGTGATGTGGATGGTACAATGCTGAACAGCAAAAGTCAAATTACTGCAACTACCACGAAAGCCTTGAAGGAGGCCTTGTCAAGGGGTGTTAAAGTGGTAGTAGCTACTGGAAAAGCTCGTCCTGCTGTGATAACTGCATTAAAGGCAGTAGATTTAGTTGGAAAAGATGGAGTTATTTCAGAGTTCTCCCCTGGGGTTTTCATACAGGGACTGCTTGTTTATGGTAGACAAGGTCGGAAAATTTTTAAAAGGAATTTAGATCCAGATGTCTGCAGAGAGGCATTTCATTACTCTTGCAAGAGTGAAGTTCCTCTTGTTGCATTCAGTGAGGATCGTTTATTGACACTATTTGATCACCCTCTTGTTGAGTCACTTCACACTGTATATCATGAGCCAAAGGCAGAGATCATGCCTTCAGTTGAACACCTCTTGGCCATTGCTGAAATACAGAAAGTGCTTTTCTTAGACACTGCTGAGGGAGTGGCTACTGCTCTGCGGCCATACTGGTCAGAAGCAGTTGGAGGTCGTGCTAATGTTGTCCAATCACAGGCAGACATGCTTGAAATCGTCCCCCCAGGAACCTCAAAAGGAAGTGGAGTAAGAATGCTACTTGATCATTTGAATGTGCCAGCACAGGAGGTAATGGCTATTGGTGATGGAGAAAATGACATTGAAATGCTTGAATTAGCTTCTCTAGGCATTGCTCTCAGTAATGGTTCGGAGAAGACAAAAGCTGTGGCTAATGTGATTGGTCCCAGCAATGACGAAGATGGTGTAGCTGATGCTATCTACCGGTATGCATTCTGA 1713 44.48 MARVLSHASPLPCPSPPSAAFVSNLSFSHSSIPFQISSPSPKSSIFGAAFRLVCRENERFSKRFGRILASQRGYRKLRRRPAKSKAKELELGVKICIEEELPDDPEILNIAEMLRLDVPIAMKLAFEGIKDSEYKTRDTTISDLGGFENVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHIPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHEISDEAEVEMEKEEELLLKSLGWKGKGLIQSAYDAETDGNSHTENSDDRKKEGSLRFYKPKFSYIFCDVDGTMLNSKSQITATTTKALKEALSRGVKVVVATGKARPAVITALKAVDLVGKDGVISEFSPGVFIQGLLVYGRQGRKIFKRNLDPDVCREAFHYSCKSEVPLVAFSEDRLLTLFDHPLVESLHTVYHEPKAEIMPSVEHLLAIAEIQKVLFLDTAEGVATALRPYWSEAVGGRANVVQSQADMLEIVPPGTSKGSGVRMLLDHLNVPAQEVMAIGDGENDIEMLELASLGIALSNGSEKTKAVANVIGPSNDEDGVADAIYRYAF* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 401318 408009 + Vvi4g30 Vvi4g30 784809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g30 570 Hamap Endoribonuclease YbeY [ybeY]. 92 261 IPR002036 GO:0004222|GO:0006364
Vvi4g30 570 ProSitePatterns Uncharacterized protein family UPF0054 signature. 226 236 IPR020549 -
Vvi4g30 570 Gene3D - 301 565 IPR023214 -
Vvi4g30 570 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 1 570 - -
Vvi4g30 570 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 1 570 IPR002036 GO:0004222|GO:0006364
Vvi4g30 570 ProSitePatterns Hypothetical cof family signature 2. 519 541 - -
Vvi4g30 570 Gene3D - 387 494 - -
Vvi4g30 570 Gene3D Metalloproteases ("zincins"), catalytic domain 118 259 IPR023091 GO:0004222
Vvi4g30 570 TIGRFAM Cof-subfamily: Cof-like hydrolase 300 565 IPR000150 GO:0016787
Vvi4g30 570 Pfam haloacid dehalogenase-like hydrolase 301 565 - -
Vvi4g30 570 SFLD Haloacid Dehalogenase 301 569 - -
Vvi4g30 570 SUPERFAMILY HAD-like 294 568 IPR036412 -
Vvi4g30 570 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 143 264 - -
Vvi4g30 570 Pfam Endoribonuclease YbeY 146 256 IPR002036 GO:0004222|GO:0006364
Vvi4g30 570 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 151 257 IPR002036 GO:0004222|GO:0006364
Vvi4g30 570 CDD HAD_Pase 301 567 - -
Vvi4g30 570 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 300 537 IPR006379 -
Vvi4g30 570 SFLD C2.B: Phosphomannomutase and Phosphatase Like 301 569 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g30 - - - vvi:100268155 1048.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32