Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g301 ATGGACAGACGCCTCTTCGAGGCAGTTCTCAAAGGCGACGTTTCATCCTTCCTCTCTCTCGCTCAAGAAGAGGAAGATATCATCAAACAAGTCGTCCCCGGCTCCCTGAACACTGTCTTACACTTAGCAGCGCGGTTTGGGCACTTGGAATTGGCGTCGGAGATAGTGAATCTAAGGCCCGAATTGTCGTCGGCCGAGAATGAAAAACTGGAGACTCCTTTGCATGAAGCATGTAGAGAGGGGAGAGTGGAGATTGTGGCGCTTTTGATGAAGGTAGATCAATGGATTGCTCCAAAGGTTAACCGGAACGACGAGAGCGTGCTGTTTGTGGGGTGCGAGAGAGGGAAGCTTGATGTGGTGAAGCATCTTTTGGTGAACCATTCATGGCTGTTGATGCTGGAATTGGATGCTCCCACCACTTCACTTCATGCTGCAGCTTCAGGAGGCCATACAGGATGTACTCCCTTGCACCTAGCTTGCAGCAAAGGTCACCTTGAGATCACAAGGGAGCTTCTGAGGTTAGACCCAGACCTCACTTCCTTACAGGACAATGATGGTCGAACACCTCTCCACTGGGCGGCCATGAAAGGGCGTGTCAACATCATTGACGAGATCCTCTCTGTCAGTCTCCAATCAGCAGAGATGAGAACCGAACATGGTGAGACTGTTTTACACCTGGCAGTGAAGAACAACCAGTATGAAGCTGTCAAGTACTTGACAGAGACTCTCAACATCTCCCAGCTCCTCAACACGCCGGATAGTGATGGCAATACCATCTTGCATCTCGCCACTGCCGGAAAACTCACCACTACGGTCCTCTATCTTCTCAAGCTGGGTGTCAATGTAAATGCTCTAAACCGCAAGGGTTACACCCCTCTAGATGTAGTTGAAACGGATGCCAGTAACTCTGGCTCGCTTGTGGTTGTGCCTGCATTACTGGAAGCGGGAGCTAAGAGGTGTGACCAATTACCGCCGGTTTCTCAAGAAATTCAAACCATTACTGAACCCTCGCGCCGGGAAAAGCAGCTTGAGCAACAGACCGAGGGTCTCCGCAATGCTAGAAACACTATCACAGTTGTGGCTGTCTTAATAGCAACTGTGACATTCTCTGCAGGCGTAAACCCCCCCGGTGGCTTCAACCAGAGCTCCGGCAAGGCCATAATGGGTAAAAAGACTCCTTTCAAGGTATTCATGGTATGCAACATTCTAGCATTGTTCCTGTCCCTAGGCATAGTCATCGTTCTTGTCAGCATCATCCCTTTCCGGCGGAAATCCATGATGAAGCTCTTGATTTCAACTCATAAGGTGATGTGGATGTCGGTGACTTTTATGGCGGCGGCTTATATAGCTGCGACATGGACAATTCTGCCAGGAGGACCGAGTACCAAGATGGAAGCCCCCATAGTAGTATGA 1413 50.04 MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRPELSSAENEKLETPLHEACREGRVEIVALLMKVDQWIAPKVNRNDESVLFVGCERGKLDVVKHLLVNHSWLLMLELDAPTTSLHAAASGGHTGCTPLHLACSKGHLEITRELLRLDPDLTSLQDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAEMRTEHGETVLHLAVKNNQYEAVKYLTETLNISQLLNTPDSDGNTILHLATAGKLTTTVLYLLKLGVNVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRCDQLPPVSQEIQTITEPSRREKQLEQQTEGLRNARNTITVVAVLIATVTFSAGVNPPGGFNQSSGKAIMGKKTPFKVFMVCNILALFLSLGIVIVLVSIIPFRRKSMMKLLISTHKVMWMSVTFMAAAYIAATWTILPGGPSTKMEAPIVV* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2889370 2892149 - Vvi4g301 Vvi4g301 785080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g301 470 ProSiteProfiles Ankyrin repeat region circular profile. 185 207 - -
Vvi4g301 470 ProSiteProfiles Ankyrin repeat region circular profile. 255 287 - -
Vvi4g301 470 Pfam Ankyrin repeats (3 copies) 216 284 IPR002110 GO:0005515
Vvi4g301 470 Pfam Ankyrin repeats (3 copies) 152 206 IPR002110 GO:0005515
Vvi4g301 470 Pfam Ankyrin repeats (3 copies) 26 90 IPR002110 GO:0005515
Vvi4g301 470 ProSiteProfiles Ankyrin repeat profile. 185 207 IPR002110 GO:0005515
Vvi4g301 470 Pfam Domain of unknown function 348 454 IPR026961 -
Vvi4g301 470 PRINTS Ankyrin repeat signature 152 167 IPR002110 GO:0005515
Vvi4g301 470 PRINTS Ankyrin repeat signature 271 285 IPR002110 GO:0005515
Vvi4g301 470 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Vvi4g301 470 Gene3D - 1 149 IPR036770 -
Vvi4g301 470 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 13 334 - -
Vvi4g301 470 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 342 460 - -
Vvi4g301 470 ProSiteProfiles Ankyrin repeat profile. 219 241 IPR002110 GO:0005515
Vvi4g301 470 SUPERFAMILY Ankyrin repeat 38 317 IPR036770 -
Vvi4g301 470 PANTHER CASKIN 342 460 - -
Vvi4g301 470 PANTHER CASKIN 13 334 - -
Vvi4g301 470 Gene3D - 245 333 IPR036770 -
Vvi4g301 470 ProSiteProfiles Ankyrin repeat region circular profile. 219 241 - -
Vvi4g301 470 ProSiteProfiles Ankyrin repeat region circular profile. 151 178 - -
Vvi4g301 470 Gene3D - 150 244 IPR036770 -
Vvi4g301 470 SMART ANK_2a 35 64 IPR002110 GO:0005515
Vvi4g301 470 SMART ANK_2a 288 322 IPR002110 GO:0005515
Vvi4g301 470 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vvi4g301 470 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vvi4g301 470 SMART ANK_2a 151 180 IPR002110 GO:0005515
Vvi4g301 470 SMART ANK_2a 219 247 IPR002110 GO:0005515
Vvi4g301 470 SMART ANK_2a 255 284 IPR002110 GO:0005515
Vvi4g301 470 SMART ANK_2a 185 215 IPR002110 GO:0005515
Vvi4g301 470 ProSiteProfiles Ankyrin repeat profile. 255 287 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g301 - - - vvi:100244024 852.432
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g301 Vvi9g316 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011486 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 31