Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g302 ATGGAATTCTATGGCAAGAGAAGTCTTTCTAGCTACATGGATGAAGAGAGGAAGGCAATTAATCAATCTCCAAATCGTGCCCCTCTCAGAACCCATCAACAAATTTCAGAACAAGACCTCCATTTAAGCCCTACAAGGTCTAGGATGACGTTAATGCCACCTCCAAGTCCAGAGTCACCATGGACGCTCTCTCCTCTCCATACTCCTTCCCCTTCTCTCCTTTACCACTGCATCGCCTCCCTTCACCGCCATGAAGGTAACATATACTCCATCGCTGTTTCCAGAGGGCTTGTCTTCACTGGCTCTGAGAGCAGCCGGGTTCGTGTATGGAGGCAACCTGACTGCATTGAGAGAGGGTATTTGAAGGCCAGCTCCGGTGAAGTCCGAGCCATCTTGGGTTATGGTAACATGCTCTTCACCACTCATAGAGACAACAAAATCCGGATGTGGAATGTCACAAATTCGGATAGTTTTCGGTCCAAGAAGGTCTCAACCCTGCCTAGAAGAAGCTCATTGTTTATTTTCCCAAGGGCAAGTCCTCAAAAGCACAAGGATTGTATTTCTTGCATGGCTTATTACCATGCAGAAGGGCTTTTATACACAGGCTCCTGGGACAGAACAGTAAAGGCATGGCGAGTTTCCGATAAGCAGTGTGTGGACTCATTTGTGGCTCATGAAGATAATGTTAATGCCATAGTGGTAAACCAGGAGGATGGTTGTCTATTTACTTGTTCTTCTGATGGATCAGTGAAGGTATGGAGGAGATTATATGTAGAGAGCTCTCATACTCTCACAATGACTCTCAAATTCCAACCCTCACCGGTAAATGCATTGGCCCTAAGCTTGTCTCTCAACACTTGCTTCCTCTACTCAGGATCCTCAGATGGGTTTATAAATTTCTGGGAGAAGGAGAAAATGTCCGGGAGGTTCAACCATGGAGGATTCCTGCAAGGTCACCGGTTCGCCGTTCTTTGTTTAGTAGCAGTGGAGAAGTTAGTATTCAGTGGCTCTGAGGATACTACAATCAGGGTTTGGAGGAGAGAAGAAGGAAGCTGCTATCATGAGTGTCTTGCAGTGTTGGATGGACATAGAGGGCCAGTGAGATGCCTAGCTGCTTGTTTGGAGATGGAGAAAGTTGTGATGGGGTTCTTGGTCTATAGTGCAAGCTTGGACCAAACTTTCAAGGTATGGAGAATTAGGGTCTTACCAGATGATCAGAAGAAGATGTGCTTGGATGAAAGCAACCGGAGCGATAGTTTGAAGGCGAAGATAATGGAGTATGAGATGAGTCCTGTGTTGTCTCCTTCATGGGTGGAGAAAAAGCTTCAAAGTAGCCATTTTCAGTAG 1347 46.1 MEFYGKRSLSSYMDEERKAINQSPNRAPLRTHQQISEQDLHLSPTRSRMTLMPPPSPESPWTLSPLHTPSPSLLYHCIASLHRHEGNIYSIAVSRGLVFTGSESSRVRVWRQPDCIERGYLKASSGEVRAILGYGNMLFTTHRDNKIRMWNVTNSDSFRSKKVSTLPRRSSLFIFPRASPQKHKDCISCMAYYHAEGLLYTGSWDRTVKAWRVSDKQCVDSFVAHEDNVNAIVVNQEDGCLFTCSSDGSVKVWRRLYVESSHTLTMTLKFQPSPVNALALSLSLNTCFLYSGSSDGFINFWEKEKMSGRFNHGGFLQGHRFAVLCLVAVEKLVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIRVLPDDQKKMCLDESNRSDSLKAKIMEYEMSPVLSPSWVEKKLQSSHFQ* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2897024 2898371 + Vvi4g302 Vvi4g302 785081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g302 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Vvi4g302 448 MobiDBLite consensus disorder prediction 1 62 - -
Vvi4g302 448 SUPERFAMILY WD40 repeat-like 76 399 IPR036322 GO:0005515
Vvi4g302 448 MobiDBLite consensus disorder prediction 24 45 - -
Vvi4g302 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Vvi4g302 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 160 IPR001680 GO:0005515
Vvi4g302 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 355 IPR001680 GO:0005515
Vvi4g302 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 110 IPR001680 GO:0005515
Vvi4g302 448 Gene3D - 164 437 IPR015943 GO:0005515
Vvi4g302 448 PANTHER OS01G0232200 PROTEIN 1 441 - -
Vvi4g302 448 Pfam WD domain, G-beta repeat 217 253 IPR001680 GO:0005515
Vvi4g302 448 Pfam WD domain, G-beta repeat 355 397 IPR001680 GO:0005515
Vvi4g302 448 Pfam WD domain, G-beta repeat 182 211 IPR001680 GO:0005515
Vvi4g302 448 Pfam WD domain, G-beta repeat 315 345 IPR001680 GO:0005515
Vvi4g302 448 Gene3D - 53 162 IPR015943 GO:0005515
Vvi4g302 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Vvi4g302 448 SMART WD40_4 261 302 IPR001680 GO:0005515
Vvi4g302 448 SMART WD40_4 114 151 IPR001680 GO:0005515
Vvi4g302 448 SMART WD40_4 309 346 IPR001680 GO:0005515
Vvi4g302 448 SMART WD40_4 215 254 IPR001680 GO:0005515
Vvi4g302 448 SMART WD40_4 168 212 IPR001680 GO:0005515
Vvi4g302 448 SMART WD40_4 74 111 IPR001680 GO:0005515
Vvi4g302 448 SMART WD40_4 353 398 IPR001680 GO:0005515
Vvi4g302 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 441 IPR045182 -
Vvi4g302 448 CDD WD40 77 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g302 - - - vvi:100266358 904.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g302 Vvi9g327 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g302 Blo01g01774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed12g1397 Cmo01g01485 . . . . . . . Bhi09g02581 Tan01g3936 Cmetu04g0169 . . Mch11g0772 . . . . . . . . . . . Cme04g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004018 2 2 2 1 0 1 0 2 1 3 1 1 1 2 3 2 1 2 1 1 1 2 1 2 0 0 2 1 2 1 41