Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g303 ATGGCCAAGATGGCTCTCGGCTCCGGCCGTGAGTTCGCCCAGCCCGACTGCATCCGAGCTCTCGTCATGGAGTTCATCGTCACCTTCCTGTTCGTCTTCGCGGGTGTCGGCTCCGCCATGGCCACCGAGAAGCTGAAGGGAGATTCACTGGACTCCCTGTTTTTTGTGGCGATGGCACATGCGCTGGTGGTGGCGGTCATGGTATCGGCGGCGCTGCAGATCTCCGGTGGCCACCTGAACCCGGCGGTGACTCTTGGTCTCTGCGTGGGTGGTCACATCACCGTTGTGAGATCCGTCCTGTACTTCATCGATCAGTGTTTGGCTTCTACTGTAGCCTGTATTCTCCTCAAGTTTCTCACTGGTGGACGGGCAACTCCAGTGCACACACTGGCGAGTGGAGTGGGGTGTCTACAAGGGGTAATGCTAGAATTTATCCTCACGTTCTCGTTGTTGTTCACAGTCTATGCCAATATAGTATCAGCACAGAAGTCTGCCCACATTGATGGGCTGGGCCCAATGATAACTGGGCTTGTGGTGGGGGCCAACGTCATGGCTGGTGGGGCCTTTTCCGGGGCTTCCATGAACCCGGCCCGGTCCTTCGGGCCGGCTTTGGTGAGCTGGGACTGGACAAACCACTGGGTGTACTGGGTTGGGCCACTGGTAGGTGGTGCGGTGGCTGGATTTGTGTATGAGAACTTTTTCATTAACAGACCCCATCTTCGTCTCCCAACAAGAGACGAAGAAGAAGAAGAAGGCTTCTAA 762 56.3 MAKMALGSGREFAQPDCIRALVMEFIVTFLFVFAGVGSAMATEKLKGDSLDSLFFVAMAHALVVAVMVSAALQISGGHLNPAVTLGLCVGGHITVVRSVLYFIDQCLASTVACILLKFLTGGRATPVHTLASGVGCLQGVMLEFILTFSLLFTVYANIVSAQKSAHIDGLGPMITGLVVGANVMAGGAFSGASMNPARSFGPALVSWDWTNHWVYWVGPLVGGAVAGFVYENFFINRPHLRLPTRDEEEEEGF* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2903930 2905762 - Vvi4g303 Vvi4g303 785082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g303 253 Pfam Major intrinsic protein 13 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 TIGRFAM MIP: MIP family channel proteins 24 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Vvi4g303 253 PANTHER AQUAPORIN-8 2 248 IPR034294 -
Vvi4g303 253 CDD MIP 19 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 PANTHER AQUAPORIN TIP4-1 2 248 - -
Vvi4g303 253 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
Vvi4g303 253 ProSitePatterns MIP family signature. 78 86 IPR022357 -
Vvi4g303 253 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g303 253 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g303 K09873 - vvi:100252631 496.123