Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g304 ATGGCAACAACGCCGTTTCAACACCTCTCTTCATCCCCACCTTTTCTCTCCTCTCTCAGATTCCCCACTTCTTCCTTCGCTTCTTCTCTCACTGGTTTCACCTCTTCTCGTCGACTCGCGCTTTTCCACCTTGGCACTGCTATACCTCAATCAGAGTTGTTGGGTGGAAAAACATTGAAGTTATTTAGAATGGAAGGAAACATGCTAGAGGCTGGCACAGCTGGAAATATGGCACAAGCTGCCGTTTCAGAGGGAAATGTACTGGAGTGGGCCAAAACTGACAAGCGAAGAATGCTTCACGTTGTTTACCGTGTGGGAAACTTGGACAAGACTATGAAATTCTATACTGAGTGCTTGGGGATGAAACTATTGAGGAGATGTGATATACCAGAGGAGAGATATGCGAATGCTTTTCTTGGATATGGGCCCGAGGATTCCCATTTTGTTGTTGAACTTACTTACAATTATGGAGTTGACAAAATCGACATTGGAACAGGTTTTGGCCATTTTGGTATTGCAGTTGAAGATGTCGCCAAAACAGTGGATCTGGTAAAGGCAAAGGGCGGAAAAGTTACCAGGGAGCCTGGTCCTGTTAAAGGTGGCAAAACAGTAATTGCATTCGTTGAAGATCCAGATGGTTATAAGTTTGAACTTTTGGAAAGAGAGCCTACACCAGAGCCCTTATGTCAAGTAATGCTTCGGGTGGGCGATCTTGATCGCTCCATAAAGTTTTATGAGAAGGCTTTTGGCATGGAGCTTCTCCGCAAAAGAGATAATCCTGAATACAAGTATACAATTGCTATGATGGGCTATGGTCCTGAAGATAAGAGTGCAGTGCTGGAATTGACTTATAACTATGGGGTCCTGGAATATGACAAAGGAAATGGCTATGCACAGATTGCAATTGGCACAGATGATGTTTATAAGACTGCAGAAGCAATCAGATTGTGTGGGGGGAAGATTACTCGTGAACCTGGGCCCTTGCCAGTTATCAACACTAAGATCACTGCCTGCTTGGACCCTGATGGATGGAAATCGGTCTTTGTTGATAATGCTGATTTTCTCAAGGAATTAGAGTGA 1080 44.17 MATTPFQHLSSSPPFLSSLRFPTSSFASSLTGFTSSRRLALFHLGTAIPQSELLGGKTLKLFRMEGNMLEAGTAGNMAQAAVSEGNVLEWAKTDKRRMLHVVYRVGNLDKTMKFYTECLGMKLLRRCDIPEERYANAFLGYGPEDSHFVVELTYNYGVDKIDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGKTVIAFVEDPDGYKFELLEREPTPEPLCQVMLRVGDLDRSIKFYEKAFGMELLRKRDNPEYKYTIAMMGYGPEDKSAVLELTYNYGVLEYDKGNGYAQIAIGTDDVYKTAEAIRLCGGKITREPGPLPVINTKITACLDPDGWKSVFVDNADFLKELE* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2911562 2917396 + Vvi4g304 Vvi4g304 785083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g304 359 ProSitePatterns Glyoxalase I signature 1. 230 251 IPR018146 GO:0004462|GO:0046872
Vvi4g304 359 PANTHER LACTOYLGLUTATHIONE LYASE 34 359 - -
Vvi4g304 359 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 230 345 IPR004360 -
Vvi4g304 359 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 98 218 IPR004360 -
Vvi4g304 359 TIGRFAM glyox_I: lactoylglutathione lyase 85 230 IPR004361 GO:0004462|GO:0046872
Vvi4g304 359 TIGRFAM glyox_I: lactoylglutathione lyase 228 353 IPR004361 GO:0004462|GO:0046872
Vvi4g304 359 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 96 226 IPR029068 -
Vvi4g304 359 PANTHER LACTOYLGLUTATHIONE LYASE 34 359 - -
Vvi4g304 359 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 227 351 IPR037523 -
Vvi4g304 359 CDD GlxI_Ni 98 219 - -
Vvi4g304 359 ProSitePatterns Glyoxalase I signature 2. 164 176 IPR018146 GO:0004462|GO:0046872
Vvi4g304 359 Gene3D - 71 223 IPR029068 -
Vvi4g304 359 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 97 221 IPR037523 -
Vvi4g304 359 Gene3D - 224 359 IPR029068 -
Vvi4g304 359 ProSitePatterns Glyoxalase I signature 1. 100 121 IPR018146 GO:0004462|GO:0046872
Vvi4g304 359 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 228 349 IPR029068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g304 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - vvi:100247523 710.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g304 Vvi11g297 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g304 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000416 3 8 3 3 3 5 4 5 5 4 4 5 4 4 3 3 5 4 2 5 3 3 4 3 4 3 5 7 6 3 123