Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g310 ATGGCTTCCATCAGAAGAACCCTGTCTCCTGCGCCTCGAGATAGAACTCTACTAAATGGGGAAGCCTGCTCAGTACCTTCTCCCTTGTCCAAGTCATCCTCAAGTACTCAAAACTATTCACCAGAAGGCAGATTGCTGTCTCCCTCATTCAGTTCATCAGACTCTCGATTGGCGTGGTATAGAATTCAAGCTTTCATTATTGGTATTTTATCACAAAGGTCTTCTCGGCCCCTGGAGAGGTCAAAGTCAAGAGGGCACGTTTGGAGGAGAGCCCTTTTCCATTTCAGCATTTGTTTCATGGTTGGGGTTTTCACTGGGTTTACTCCTTTTGTCTCGATGAATTTATCAATGAATCTCATGTCAAAGCACCAAGCATTCTACTTTGGGTTGATTCCCCCAGTGGGGAAACTTCAGGCATATGGCTTTGTATCAAGTAAAAGAGAGATGCCATCATTAAACAGTGGAATTACAGACAATAATGTCACACTAGGGCCACAAGCAATGAAACAAGAACTTGTAAATGGGACTGCTGGTGATGTCAATACACCAACACTCATTCAGAATTCAAATTTGGTTTCTCGGAAGCTTTTGATAATTGTAACCCCAACTTATGCTCGACCTTTTCAAGCCTATTATCTAAATCGTCTGGCACACACATTAAAACAGGTTCCACCTCCTCTGTTGTGGATAGTTGTAGAGATGATGTCCCAATCTGCTGAAACAGCTGACATGTTGATGAGAACTGGTGTTATGTACAGGCATCTTATGTGCAATAAGAATTTAACTGACATCAAAGATAGAGGTGTCCACCTAAGAAACACAGCACTTTCTCACATTGAAACACACCGTCTTGATGGGACTGTTTACTTTGCAGATGATGATAATATCTACTCTGTTGATCTTTTTGAGCAAATACGGCAGATCAGGCGGTTTGGGACATGGACAGTGGCCAAATTGATGGAGAGCAAAAGCAAAACTCTATTGGAGGGTCCTGTTTGCAATGGGAGTCAAGTCATTGGTTGGCACACCAATGAAATGACCAGAAGATTCCGGAGGTTCCACACTGAAATGTCAGGGTTTGCCTTCAACAGTACAATCCTCTGGGACCCAAAGAGATGGCACCGACCTACCCTTGAGCCTATTAGACAGCTTGACACTGTCAAGGAAGGCTTCCAAGTGAGCACATTTATTGAACGACTTGTGGAGGATGAAAGCCAAATGGAAGGATTACCAGAGGGTTGCTCGACAATCATGGTTTGGCATCTTCATCTTGAATCATCTCATTCCTTCTATCCTCGTGAATGGTTGATGAAGAATAATCTAGATGTCATAGCCCAACTTGCATGA 1347 43.21 MASIRRTLSPAPRDRTLLNGEACSVPSPLSKSSSSTQNYSPEGRLLSPSFSSSDSRLAWYRIQAFIIGILSQRSSRPLERSKSRGHVWRRALFHFSICFMVGVFTGFTPFVSMNLSMNLMSKHQAFYFGLIPPVGKLQAYGFVSSKREMPSLNSGITDNNVTLGPQAMKQELVNGTAGDVNTPTLIQNSNLVSRKLLIIVTPTYARPFQAYYLNRLAHTLKQVPPPLLWIVVEMMSQSAETADMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQIRRFGTWTVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIERLVEDESQMEGLPEGCSTIMVWHLHLESSHSFYPREWLMKNNLDVIAQLA* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2958241 2971785 - Vvi4g310 Vvi4g310 785089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g310 448 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 196 441 IPR029044 -
Vvi4g310 448 SUPERFAMILY Nucleotide-diphospho-sugar transferases 196 440 IPR029044 -
Vvi4g310 448 MobiDBLite consensus disorder prediction 23 43 - -
Vvi4g310 448 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 445 - -
Vvi4g310 448 MobiDBLite consensus disorder prediction 1 43 - -
Vvi4g310 448 CDD GlcAT-I 195 425 IPR005027 GO:0015018|GO:0016020
Vvi4g310 448 Pfam Glycosyltransferase family 43 216 425 IPR005027 GO:0015018|GO:0016020
Vvi4g310 448 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 445 IPR005027 GO:0015018|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g310 K20869 IRX9; putative beta-1,4-xylosyltransferase IRX9 [EC:2.4.2.-] - vvi:100257821 895.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g310 . . . . Bpe02g01178 . . . . . . . Car09g00564 . . . Cpe06g00471 . . . . . . . . . . . . . . . . Cone17ag1154 Cone20ag0574 . Csa03g04555 Chy04g00147 . Blo17g00075 . Bda01g00933 Bda13g01336 Bpe14g00511 . . . . . Cmo09g00620 Cma09g00638 . . . . . Bhi09g02586 . . . . . . . . . . . . . . . . Cme04g00173
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010529 2 4 2 2 2 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 32