Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g311 ATGGCCATGGCGACTAGGGTTTTTCTGCTTCTTCTCTTAGTCTTGATATCATCGCCAAGCCCTAGTTTTTCCCTCTATGAGGACCAAGTTGGCCTCATGGACTGGCATCAACAGTACATCGGGAAAGTGAAGCACGCCGTGTTCCACACTCAAAAGGCCGGACGGAAACGCGTGGTGGTGTCGACGGAGGAGAACGTCATCGCATCTTTGGATCTCCGGCGTGGGGATATTTTTTGGAGGCATGTGCTCGGGCCCAATGATGCGGTAGATGAAATTGATATCGCCCTTGGCAAATATGTCATTACCCTTTCGTCAGAGGGAAGTATTTTAAGAGCATGGAACCTTCCTGATGGCCAGATGGTGTGGGAGTCTTTCCTTCAGGGCCCAAAGCCATCAAAATCATTATTATCAGTGTCAGCAAATTTGAAAATTGACAAGGACAATGTGATCTTTGTTTTTGGAAAAGGGTGTCTCCATGCTGTTTCAAGCATAGATGGTGAGGTGCTTTGGAAGAAGGATTTTGCGGATGAAAGCTTAGAGGTTCAACAGATAATTCACCCTCTTGGAAGTGATATGATATATGCTGTAGGATTTGTGGGTTTGTCTCAGTTGGATGCATATCAAATTAATGTTAGGAATGGTGAAGTGCTGAAGCACCGTAGTGCAGCATTTCCTGGTGGCTTTTGTGGGGAAGTTTCATTAGTTTCAAGTGACACACTTGTGGCACTAGATGCCACTAGGTCCTCTTTAATATCAATTAGTTTTCTGGATGGAGAAATCAGCTTACAACAAACACATATTTCAAATCTTGTTGGAGATTCGTTTGGGATGGCTGTCATGTTACCTTCTAAGCTTTCAGGGATGCTTATGATAAAAATCGATAACTATATGGTATTTGTGAGAGTAGCAGATGAGGGCAAACTGGAGGTTGCGGAGAAAATTAATGATGCAGCAGCAGCTGTTAGTGATGCTCTGGCACTCTCTGAGGGCCAACAAGCTTTTGGATTAGTTGAACATGGAGGTAACAAGATTCATCTCACAGTCAAGCTTGTTAATGACTGGAATGGTGATCTGCTCAAGGAAAGCATTAGAATGGACCACCAAAGGGGCTGTGTGCATAAAATTTTCATAAACAGTTATATCCGGACAGACAGGTCTCATGGGTTTAGGGCCTTGATTGTCATGGAGGATCATTCACTGTTATTACTACAACAAGGTGAGATTGTCTGGAGTAGGGAGGATGGGCTTGCCTCAATTATAGATGTAACAGCATCAGAATTGCCCGTAGAAAAGGAAGGTGTATCTGTGGCTAAAGTGGAACACAATTTATTTGAGTGGCTGAAGGGACACATGCTGAAGCTTAAAGGAACTCTGATGCTTGCAAGCCCTGAGGATATGATAGCCATACAAGGAATGAGGTTAAAAAGCTCTGAAAAGAGCAAAATGACCCGAGACCACAATGGTTTTAGAAAGTTGCTCATTGTACTTACTAGAGCAGGGAAGCTTTTTGCCTTGCACACAGGTGACGGACGGGTTGTCTGGTCTGTCTTGTTGCATTCTCTTCATAATTCAGAAGCTTGCGCATATCCCACTGGACTTAATGTGTATCAGTGGCAAGTTCCCCATCATCATGCGATGGATGAAAATCCATCTGTTCTTGTAGTTGGCAGGTGTGGACTTGGTTCAGATGCACCAGGTGTTCTCTCCTTTGTTGACACTTACACAGGGAAGGAACTTGATTCATTGTTTCTCACTCATTCCATAGAACGAATTATTCCCCTTTCATTCACAGATTCAAGAGAACAGCGCCTCCATCTAATTATAGATACTGATCACCATGCACATCTATACCCAAGAACTCCTGAGGCTATTGGTATCTTCCAACATGAGTTACCCAACATATATTGGTATTCAGTTGAAGCTGAAAATGGCATTATCAGAGGGCATGCTTTAAAGAGCAATTGCATTCTTCAAGAAGGTGATGAATACTGCTTTGACACCAGGGATTTGTGGTCAATTGTATTCCCATCAGAGTCAGAAAAGATTCTTGCAACTGTGACAAGAAAATTGAATGAGGTGGTTCATACTCAAGCTAAGGTAATAACAGATCAGGATGTGATGTACAAGTATGTATCGAAAAATCTTCTTTTTGTAGCCACTGTTGCACCCAAAGCCACTGGTGAAATTGGATCAGTTACGCCAGAGGAATCATGGTTGGTTGTATATCTTATTGATACTGTAACCGGCCGTATAATATACCGCATGACTCATCATGGTACACAAGGTCCTGTCCATGCTGTTTTTAGTGAGAACTGGGTCGTCTACCACTATTTTAATCTCAGAGCACACAGATATGAGATGTCAGTTGTTGAGATCTATGATCAGTCTCGGGCGGATAACAAAGATGTGTGGAAGCTTGTTCTTGGAAAGCATAATCTTACTTCACCTGTTTCTTCATATTCTCGACCTGAGGTCATAACGAAATCACAGTTTTATTTTTTTACCCATTCTGTGAAAGCAATGGCAGTGACATCAACTGCCAAGGGTATAACATCGAAGCAGCTCCTTATTGGTACAATTGGCGATCAGGTTTTGGCACTTGATAAGCGTTATCTGGATCCTCGTCGAACAATTAATCCTTCACAATCTGAGAGAGAAGAAGGAATCATTCCTCTGACAGATTCATTGCCAATCATTCCTCAGTCATATGTGACACACAACCTTAAAGTAGAAGGTCTGCGAGGCATAGTAACAGCACCTGCTAAGCTGGAGTCAACTACCCTTGTCTTTGCTTATGGAGTGGATCTGTTCTTCACCCGGATTGCACCCTCACGGACGTATGATTTGCTTACCGATGATTTCAGCTATGCTCTACTTCTAATTACAATAGTTGCATTGGTTGCGGCAATATTTGTAACATGGATTTTGTCTGAGAGGAAGGAACTGCAAGAGAAGTGGAGGTAA 2964 42.75 MAMATRVFLLLLLVLISSPSPSFSLYEDQVGLMDWHQQYIGKVKHAVFHTQKAGRKRVVVSTEENVIASLDLRRGDIFWRHVLGPNDAVDEIDIALGKYVITLSSEGSILRAWNLPDGQMVWESFLQGPKPSKSLLSVSANLKIDKDNVIFVFGKGCLHAVSSIDGEVLWKKDFADESLEVQQIIHPLGSDMIYAVGFVGLSQLDAYQINVRNGEVLKHRSAAFPGGFCGEVSLVSSDTLVALDATRSSLISISFLDGEISLQQTHISNLVGDSFGMAVMLPSKLSGMLMIKIDNYMVFVRVADEGKLEVAEKINDAAAAVSDALALSEGQQAFGLVEHGGNKIHLTVKLVNDWNGDLLKESIRMDHQRGCVHKIFINSYIRTDRSHGFRALIVMEDHSLLLLQQGEIVWSREDGLASIIDVTASELPVEKEGVSVAKVEHNLFEWLKGHMLKLKGTLMLASPEDMIAIQGMRLKSSEKSKMTRDHNGFRKLLIVLTRAGKLFALHTGDGRVVWSVLLHSLHNSEACAYPTGLNVYQWQVPHHHAMDENPSVLVVGRCGLGSDAPGVLSFVDTYTGKELDSLFLTHSIERIIPLSFTDSREQRLHLIIDTDHHAHLYPRTPEAIGIFQHELPNIYWYSVEAENGIIRGHALKSNCILQEGDEYCFDTRDLWSIVFPSESEKILATVTRKLNEVVHTQAKVITDQDVMYKYVSKNLLFVATVAPKATGEIGSVTPEESWLVVYLIDTVTGRIIYRMTHHGTQGPVHAVFSENWVVYHYFNLRAHRYEMSVVEIYDQSRADNKDVWKLVLGKHNLTSPVSSYSRPEVITKSQFYFFTHSVKAMAVTSTAKGITSKQLLIGTIGDQVLALDKRYLDPRRTINPSQSEREEGIIPLTDSLPIIPQSYVTHNLKVEGLRGIVTAPAKLESTTLVFAYGVDLFFTRIAPSRTYDLLTDDFSYALLLITIVALVAAIFVTWILSERKELQEKWR* 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2974862 2984519 + Vvi4g311 Vvi4g311 785090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g311 987 Pfam PQQ-like domain 54 241 IPR002372 -
Vvi4g311 987 Pfam ER membrane protein complex subunit 1, C-terminal 769 986 IPR011678 -
Vvi4g311 987 PANTHER UNCHARACTERIZED 9 987 IPR026895 GO:0072546
Vvi4g311 987 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 34 252 IPR011047 -
Vvi4g311 987 SMART ire1_9 486 517 IPR018391 -
Vvi4g311 987 SMART ire1_9 143 173 IPR018391 -
Vvi4g311 987 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 103 879 IPR011047 -
Vvi4g311 987 Gene3D - 25 331 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g311 K23562 EMC1; ER membrane protein complex subunit 1 - vvi:100264673 1937.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g311 Blo01g01772 Blo12g00758 . Bda03g00429 . Bpe02g00172 Bma04g00404 Bma01g02553 . Cmo12g00212 . . . Car12g00242 Sed01g1273 Cpe07g00221 . Bhi04g00834 Tan02g2572 Cmetu03g1902 . Hepe10g0351 . Lcy13g1396 . . . . . . . . . Cone17ag1117 Cone20ag0604 . . . Cme03g01734 . . . . . Bpe04g00395 . . . . . . Cma12g00258 . . . . . . . . . . . Cla08g01229 Cam08g1688 Cec08g1267 Cco08g1388 Clacu08g1386 . Cre08g1171 Lsi08g01092 . Chy03g01240 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006904 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37