Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g315 ATGTCAGCCGTGCGATCATCGTCATCCTCATCTCACCGTCAAAAGTCTCAAAAATTCAATTTCAAAAGCTCGAGAGGGAGGAGAGGAGAGAAAAAGCCTAGACTGTACGTCTCTCCCTTCGTCTCCGATCCCGTACAAGTTGCAGGTGTAGATTCCGATCACCCCGAAACCGCTTCGGACGAGCTATTTCAGATTCCGTCGAGAGCGGCAGCCCGAGGCACTCAACGACACCGTTTTTTCATTCTTCGCGCGAACGAGGCATCTGATTTTCCGGCGAAGAGGCAATTGGATTTCACGGCGATGTGTCGAGCTTCGGCAAATGTGATCTTGCCGGAGCACCCGCAGTTACCGCTACAGACACAGCCACAACGATCACAATCACAGTCGCAGTGGCAGTTACAATCACAGTCACCGCCGCAGCTGTTGCCGCCACAGCCGCGGCCGCAACTAGTGCCGGTGGTACCGCGGATAACAAATCCCTCCCGGCCAACATTGCAAGCGGTCAAGCAAGAGTCACCAAGATCACTACCACGATCCAACAGTGAAGTGAAAGATGGAACTCCAAAGAAGAAAAAGCATTGTAATTGCAAAAATTCTCGATGTTTGAAATTGTACTGTGAGTGCTTTGCTTCGGGAGTTTATTGCAATAATTGCCACTGTTCAAACTGTCAAAATAATGTGGTGAATGAGGCTGCTAGGAAGGAGGCAGTTGGTTCAACCTTAGACCGTAATCCAAATGCATTCAGACCAAAGATTGCTAATAGTCCACATGGATCTCATGATGGTGGGGAAGAGGCTGGGAAAGTCCCATTGGTGGGAAAGCACAATAAAGGATGCCACTGCAAGAAATCAGGTTGCCTCAAGAAGTACTGTGAGTGCTTTCAAGCAAACATTCTGTGCTCTGAGAACTGTAAATGTATGGATTGTAAGAACTTTGAGGGGAGTGAAGAGAGAAGGGCTCTTTTCCATGACAATGGAAACTACATGGCCTACATCCAACAGGCAGCCAATGCTGCCATTAGTGGGGCCATTGGATCCTCTGGCTATGGGACAGCTGTGGCATCCAAGAAGAGAAAACAACAAGTCTCCTTTTGTACAACAGCCAACAATCAATCGAATCATAGGAATACTCAATTTCAACAGGATAATCATCTAAGAGCTTCTGCTGTCTCTCCTTCGCCATCCATTTCTGTTACTCACACAAATAATGCAGCAGTATTGGGTTCTTCAAAATTCACATACAGGTCTCCATTAGCTGACATCTTACAACTGCAAGATGTGAAGGATCTTTGCTCTCTTTTGGTCGTAGTTTCACAGGAAGCTGGAAAAACACTCACAGAAGCGGAGAGGGATCACATTGAAACTTCTATTATTTCTTCAACTCAAGAGAGGGAACATCTTCAGACAGATGATGTTCAGAAACCATTGCCTGATGCTTGTTTGAGCGAAAACCAAGTGGAAAGAGTTCAAACAGATGAATTAGACCAAGCTGATGTACAAAATGGGAGACTCATGTCTCCTGGAACTCTTGCGTTGATGTGTGATGAGCAAGATTCAATCTTCATGGTACGTGGGTCTCCAGATGGGGTTGTTGGCAGTAGTCAAATCCCAACAGTGAAGTCATCTCATGGGCAAGCCTGCACTGAGGTTTATGTAGAGCAGGAAAGACTTGTGTTGACAAAGTTCTGGGATTTCCTTAACAGGCTCATCACTTGTGGGAGCATAAAAGAAACTATGTGTTCTCCATTAGCCAAAAGCCACACAGGAAACCAGCAAGAACCCTTGGAGGATGACGCCACAAAAGTTGGAACTGGAAAGGGGAATCACAAGGAGCCCAATGGCAATAGCATTGTAAAACCTTCTTTCGCAGCCACAACTCAAATGTCTCAGACAATCGCTGCGGCCAAAGGCAATGGCATTGCAAAACAAAAACCTCCTTTCCCAGCCACGACTCACATATCTCAGACAATCCCTGCAGTCCATGGCAATGGCACTGCAAAACCCCCTCCATCCACAAATCAAATGTCTTAA 2031 46.43 MSAVRSSSSSSHRQKSQKFNFKSSRGRRGEKKPRLYVSPFVSDPVQVAGVDSDHPETASDELFQIPSRAAARGTQRHRFFILRANEASDFPAKRQLDFTAMCRASANVILPEHPQLPLQTQPQRSQSQSQWQLQSQSPPQLLPPQPRPQLVPVVPRITNPSRPTLQAVKQESPRSLPRSNSEVKDGTPKKKKHCNCKNSRCLKLYCECFASGVYCNNCHCSNCQNNVVNEAARKEAVGSTLDRNPNAFRPKIANSPHGSHDGGEEAGKVPLVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHDNGNYMAYIQQAANAAISGAIGSSGYGTAVASKKRKQQVSFCTTANNQSNHRNTQFQQDNHLRASAVSPSPSISVTHTNNAAVLGSSKFTYRSPLADILQLQDVKDLCSLLVVVSQEAGKTLTEAERDHIETSIISSTQEREHLQTDDVQKPLPDACLSENQVERVQTDELDQADVQNGRLMSPGTLALMCDEQDSIFMVRGSPDGVVGSSQIPTVKSSHGQACTEVYVEQERLVLTKFWDFLNRLITCGSIKETMCSPLAKSHTGNQQEPLEDDATKVGTGKGNHKEPNGNSIVKPSFAATTQMSQTIAAAKGNGIAKQKPPFPATTHISQTIPAVHGNGTAKPPPSTNQMS* 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3022801 3030621 + Vvi4g315 Vvi4g315 785094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g315 676 ProSiteProfiles CRC domain profile. 190 314 IPR005172 -
Vvi4g315 676 PANTHER TESMIN/TSO1-RELATED 86 640 IPR028307 -
Vvi4g315 676 MobiDBLite consensus disorder prediction 640 676 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 115 138 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 159 182 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 1 69 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 648 676 - -
Vvi4g315 676 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 191 226 IPR005172 -
Vvi4g315 676 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 277 311 IPR005172 -
Vvi4g315 676 MobiDBLite consensus disorder prediction 139 153 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 585 618 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 241 265 - -
Vvi4g315 676 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 86 640 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 115 191 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 1 17 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 591 605 - -
Vvi4g315 676 SMART CXC_2 274 315 IPR033467 -
Vvi4g315 676 SMART CXC_2 189 229 IPR033467 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g315 Vvi11g318 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14743 PF03638 TCR 3.70E-12 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g315 - K21776 vvi:100243881 1094.72