Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g315 ATGTCAGCCGTGCGATCATCGTCATCCTCATCTCACCGTCAAAAGTCTCAAAAATTCAATTTCAAAAGCTCGAGAGGGAGGAGAGGAGAGAAAAAGCCTAGACTGTACGTCTCTCCCTTCGTCTCCGATCCCGTACAAGTTGCAGGTGTAGATTCCGATCACCCCGAAACCGCTTCGGACGAGCTATTTCAGATTCCGTCGAGAGCGGCAGCCCGAGGCACTCAACGACACCGTTTTTTCATTCTTCGCGCGAACGAGGCATCTGATTTTCCGGCGAAGAGGCAATTGGATTTCACGGCGATGTGTCGAGCTTCGGCAAATGTGATCTTGCCGGAGCACCCGCAGTTACCGCTACAGACACAGCCACAACGATCACAATCACAGTCGCAGTGGCAGTTACAATCACAGTCACCGCCGCAGCTGTTGCCGCCACAGCCGCGGCCGCAACTAGTGCCGGTGGTACCGCGGATAACAAATCCCTCCCGGCCAACATTGCAAGCGGTCAAGCAAGAGTCACCAAGATCACTACCACGATCCAACAGTGAAGTGAAAGATGGAACTCCAAAGAAGAAAAAGCATTGTAATTGCAAAAATTCTCGATGTTTGAAATTGTACTGTGAGTGCTTTGCTTCGGGAGTTTATTGCAATAATTGCCACTGTTCAAACTGTCAAAATAATGTGGTGAATGAGGCTGCTAGGAAGGAGGCAGTTGGTTCAACCTTAGACCGTAATCCAAATGCATTCAGACCAAAGATTGCTAATAGTCCACATGGATCTCATGATGGTGGGGAAGAGGCTGGGAAAGTCCCATTGGTGGGAAAGCACAATAAAGGATGCCACTGCAAGAAATCAGGTTGCCTCAAGAAGTACTGTGAGTGCTTTCAAGCAAACATTCTGTGCTCTGAGAACTGTAAATGTATGGATTGTAAGAACTTTGAGGGGAGTGAAGAGAGAAGGGCTCTTTTCCATGACAATGGAAACTACATGGCCTACATCCAACAGGCAGCCAATGCTGCCATTAGTGGGGCCATTGGATCCTCTGGCTATGGGACAGCTGTGGCATCCAAGAAGAGAAAACAACAAGTCTCCTTTTGTACAACAGCCAACAATCAATCGAATCATAGGAATACTCAATTTCAACAGGATAATCATCTAAGAGCTTCTGCTGTCTCTCCTTCGCCATCCATTTCTGTTACTCACACAAATAATGCAGCAGTATTGGGTTCTTCAAAATTCACATACAGGTCTCCATTAGCTGACATCTTACAACTGCAAGATGTGAAGGATCTTTGCTCTCTTTTGGTCGTAGTTTCACAGGAAGCTGGAAAAACACTCACAGAAGCGGAGAGGGATCACATTGAAACTTCTATTATTTCTTCAACTCAAGAGAGGGAACATCTTCAGACAGATGATGTTCAGAAACCATTGCCTGATGCTTGTTTGAGCGAAAACCAAGTGGAAAGAGTTCAAACAGATGAATTAGACCAAGCTGATGTACAAAATGGGAGACTCATGTCTCCTGGAACTCTTGCGTTGATGTGTGATGAGCAAGATTCAATCTTCATGGTACGTGGGTCTCCAGATGGGGTTGTTGGCAGTAGTCAAATCCCAACAGTGAAGTCATCTCATGGGCAAGCCTGCACTGAGGTTTATGTAGAGCAGGAAAGACTTGTGTTGACAAAGTTCTGGGATTTCCTTAACAGGCTCATCACTTGTGGGAGCATAAAAGAAACTATGTGTTCTCCATTAGCCAAAAGCCACACAGGAAACCAGCAAGAACCCTTGGAGGATGACGCCACAAAAGTTGGAACTGGAAAGGGGAATCACAAGGAGCCCAATGGCAATAGCATTGTAAAACCTTCTTTCGCAGCCACAACTCAAATGTCTCAGACAATCGCTGCGGCCAAAGGCAATGGCATTGCAAAACAAAAACCTCCTTTCCCAGCCACGACTCACATATCTCAGACAATCCCTGCAGTCCATGGCAATGGCACTGCAAAACCCCCTCCATCCACAAATCAAATGTCTTAA 2031 46.43 MSAVRSSSSSSHRQKSQKFNFKSSRGRRGEKKPRLYVSPFVSDPVQVAGVDSDHPETASDELFQIPSRAAARGTQRHRFFILRANEASDFPAKRQLDFTAMCRASANVILPEHPQLPLQTQPQRSQSQSQWQLQSQSPPQLLPPQPRPQLVPVVPRITNPSRPTLQAVKQESPRSLPRSNSEVKDGTPKKKKHCNCKNSRCLKLYCECFASGVYCNNCHCSNCQNNVVNEAARKEAVGSTLDRNPNAFRPKIANSPHGSHDGGEEAGKVPLVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHDNGNYMAYIQQAANAAISGAIGSSGYGTAVASKKRKQQVSFCTTANNQSNHRNTQFQQDNHLRASAVSPSPSISVTHTNNAAVLGSSKFTYRSPLADILQLQDVKDLCSLLVVVSQEAGKTLTEAERDHIETSIISSTQEREHLQTDDVQKPLPDACLSENQVERVQTDELDQADVQNGRLMSPGTLALMCDEQDSIFMVRGSPDGVVGSSQIPTVKSSHGQACTEVYVEQERLVLTKFWDFLNRLITCGSIKETMCSPLAKSHTGNQQEPLEDDATKVGTGKGNHKEPNGNSIVKPSFAATTQMSQTIAAAKGNGIAKQKPPFPATTHISQTIPAVHGNGTAKPPPSTNQMS* 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3022801 3030621 + Vvi4g315 Vvi4g315 785094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g315 676 ProSiteProfiles CRC domain profile. 190 314 IPR005172 -
Vvi4g315 676 PANTHER TESMIN/TSO1-RELATED 86 640 IPR028307 -
Vvi4g315 676 MobiDBLite consensus disorder prediction 640 676 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 115 138 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 159 182 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 1 69 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 648 676 - -
Vvi4g315 676 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 191 226 IPR005172 -
Vvi4g315 676 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 277 311 IPR005172 -
Vvi4g315 676 MobiDBLite consensus disorder prediction 139 153 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 585 618 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 241 265 - -
Vvi4g315 676 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 86 640 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 115 191 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 1 17 - -
Vvi4g315 676 MobiDBLite consensus disorder prediction 591 605 - -
Vvi4g315 676 SMART CXC_2 274 315 IPR033467 -
Vvi4g315 676 SMART CXC_2 189 229 IPR033467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g315 - - K21776 vvi:100243881 1094.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g315 Vvi11g318 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g315 . . . . . . . Bma01g02162 . . . Cma05g00464 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi11g318 ECH 1 441 CPP Transcription Factor Family AT2G20110 58.7 4.6e-139 491.9
Vvi4g315 ECH 171 581 CPP Transcription Factor Family AT2G20110 53.9 2.6e-110 396.4
Vvi11g318 ECH 2 515 CPP Transcription Factor Family AT4G29000 57.5 3.5e-156 548.9
Vvi4g315 ECH 149 587 CPP Transcription Factor Family AT4G29000 53.0 7.9e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14743 PF03638 TCR 3.70E-12 No_clan Vvi TF