Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g315 | ATGTCAGCCGTGCGATCATCGTCATCCTCATCTCACCGTCAAAAGTCTCAAAAATTCAATTTCAAAAGCTCGAGAGGGAGGAGAGGAGAGAAAAAGCCTAGACTGTACGTCTCTCCCTTCGTCTCCGATCCCGTACAAGTTGCAGGTGTAGATTCCGATCACCCCGAAACCGCTTCGGACGAGCTATTTCAGATTCCGTCGAGAGCGGCAGCCCGAGGCACTCAACGACACCGTTTTTTCATTCTTCGCGCGAACGAGGCATCTGATTTTCCGGCGAAGAGGCAATTGGATTTCACGGCGATGTGTCGAGCTTCGGCAAATGTGATCTTGCCGGAGCACCCGCAGTTACCGCTACAGACACAGCCACAACGATCACAATCACAGTCGCAGTGGCAGTTACAATCACAGTCACCGCCGCAGCTGTTGCCGCCACAGCCGCGGCCGCAACTAGTGCCGGTGGTACCGCGGATAACAAATCCCTCCCGGCCAACATTGCAAGCGGTCAAGCAAGAGTCACCAAGATCACTACCACGATCCAACAGTGAAGTGAAAGATGGAACTCCAAAGAAGAAAAAGCATTGTAATTGCAAAAATTCTCGATGTTTGAAATTGTACTGTGAGTGCTTTGCTTCGGGAGTTTATTGCAATAATTGCCACTGTTCAAACTGTCAAAATAATGTGGTGAATGAGGCTGCTAGGAAGGAGGCAGTTGGTTCAACCTTAGACCGTAATCCAAATGCATTCAGACCAAAGATTGCTAATAGTCCACATGGATCTCATGATGGTGGGGAAGAGGCTGGGAAAGTCCCATTGGTGGGAAAGCACAATAAAGGATGCCACTGCAAGAAATCAGGTTGCCTCAAGAAGTACTGTGAGTGCTTTCAAGCAAACATTCTGTGCTCTGAGAACTGTAAATGTATGGATTGTAAGAACTTTGAGGGGAGTGAAGAGAGAAGGGCTCTTTTCCATGACAATGGAAACTACATGGCCTACATCCAACAGGCAGCCAATGCTGCCATTAGTGGGGCCATTGGATCCTCTGGCTATGGGACAGCTGTGGCATCCAAGAAGAGAAAACAACAAGTCTCCTTTTGTACAACAGCCAACAATCAATCGAATCATAGGAATACTCAATTTCAACAGGATAATCATCTAAGAGCTTCTGCTGTCTCTCCTTCGCCATCCATTTCTGTTACTCACACAAATAATGCAGCAGTATTGGGTTCTTCAAAATTCACATACAGGTCTCCATTAGCTGACATCTTACAACTGCAAGATGTGAAGGATCTTTGCTCTCTTTTGGTCGTAGTTTCACAGGAAGCTGGAAAAACACTCACAGAAGCGGAGAGGGATCACATTGAAACTTCTATTATTTCTTCAACTCAAGAGAGGGAACATCTTCAGACAGATGATGTTCAGAAACCATTGCCTGATGCTTGTTTGAGCGAAAACCAAGTGGAAAGAGTTCAAACAGATGAATTAGACCAAGCTGATGTACAAAATGGGAGACTCATGTCTCCTGGAACTCTTGCGTTGATGTGTGATGAGCAAGATTCAATCTTCATGGTACGTGGGTCTCCAGATGGGGTTGTTGGCAGTAGTCAAATCCCAACAGTGAAGTCATCTCATGGGCAAGCCTGCACTGAGGTTTATGTAGAGCAGGAAAGACTTGTGTTGACAAAGTTCTGGGATTTCCTTAACAGGCTCATCACTTGTGGGAGCATAAAAGAAACTATGTGTTCTCCATTAGCCAAAAGCCACACAGGAAACCAGCAAGAACCCTTGGAGGATGACGCCACAAAAGTTGGAACTGGAAAGGGGAATCACAAGGAGCCCAATGGCAATAGCATTGTAAAACCTTCTTTCGCAGCCACAACTCAAATGTCTCAGACAATCGCTGCGGCCAAAGGCAATGGCATTGCAAAACAAAAACCTCCTTTCCCAGCCACGACTCACATATCTCAGACAATCCCTGCAGTCCATGGCAATGGCACTGCAAAACCCCCTCCATCCACAAATCAAATGTCTTAA | 2031 | 46.43 | MSAVRSSSSSSHRQKSQKFNFKSSRGRRGEKKPRLYVSPFVSDPVQVAGVDSDHPETASDELFQIPSRAAARGTQRHRFFILRANEASDFPAKRQLDFTAMCRASANVILPEHPQLPLQTQPQRSQSQSQWQLQSQSPPQLLPPQPRPQLVPVVPRITNPSRPTLQAVKQESPRSLPRSNSEVKDGTPKKKKHCNCKNSRCLKLYCECFASGVYCNNCHCSNCQNNVVNEAARKEAVGSTLDRNPNAFRPKIANSPHGSHDGGEEAGKVPLVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHDNGNYMAYIQQAANAAISGAIGSSGYGTAVASKKRKQQVSFCTTANNQSNHRNTQFQQDNHLRASAVSPSPSISVTHTNNAAVLGSSKFTYRSPLADILQLQDVKDLCSLLVVVSQEAGKTLTEAERDHIETSIISSTQEREHLQTDDVQKPLPDACLSENQVERVQTDELDQADVQNGRLMSPGTLALMCDEQDSIFMVRGSPDGVVGSSQIPTVKSSHGQACTEVYVEQERLVLTKFWDFLNRLITCGSIKETMCSPLAKSHTGNQQEPLEDDATKVGTGKGNHKEPNGNSIVKPSFAATTQMSQTIAAAKGNGIAKQKPPFPATTHISQTIPAVHGNGTAKPPPSTNQMS* | 677 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3022801 | 3030621 | + | Vvi4g315 | Vvi4g315 | 785094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g315 | 676 | ProSiteProfiles | CRC domain profile. | 190 | 314 | IPR005172 | - | |
Vvi4g315 | 676 | PANTHER | TESMIN/TSO1-RELATED | 86 | 640 | IPR028307 | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 640 | 676 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 115 | 138 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 159 | 182 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 648 | 676 | - | - | |
Vvi4g315 | 676 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 191 | 226 | IPR005172 | - | |
Vvi4g315 | 676 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 277 | 311 | IPR005172 | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 139 | 153 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 585 | 618 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 241 | 265 | - | - | |
Vvi4g315 | 676 | PANTHER | PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 | 86 | 640 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 115 | 191 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Vvi4g315 | 676 | MobiDBLite | consensus disorder prediction | 591 | 605 | - | - | |
Vvi4g315 | 676 | SMART | CXC_2 | 274 | 315 | IPR033467 | - | |
Vvi4g315 | 676 | SMART | CXC_2 | 189 | 229 | IPR033467 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14743 | PF03638 | TCR | 3.70E-12 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g315 | - | K21776 | vvi:100243881 | 1094.72 |