Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g328 ATGGGAACGGCGTCTTTTGATGAAGAAACAGTGAAGAAAGTCATTCGTCAGGTGGAGTTCTACTTTAGTGATAGTAATCTTCCAAGAGACAATTTTCTCAAGAAAACCATAAGTGAGAGTGAAGATGGATTGGTTAGTTTGGCTTTGATTTGTTCATTTTCTCGGATGAGAAGTCATCTTAATTTGGGGGACGTTAAGCCCGAAGATGTTTCAGAAGACACCTTGAAGGCTGTGGCTGAAATTCTGAGAAATTCTACTACCCTTAAGGTTTCTGAAGATGGGAAAAAGATTGGCAGGGCTACTGAACTTTTAAAGCCAGAAGAGGTGGTAGAGCAAGTGGACATAAGGACAATTGCAGCATCACCCCTAGAATATGATGCAAAGCTTGAAGATGTGGAGGCTTACTTTGGTCAATTTGCCAAGGTTAATAGTGTTAGGCTGCCCCGTCATGTTGCAGAGAAAAGGGTATTTTGTGGTACGGCCCTAATTGAATACTCAACTGAGGAAGATGCTGCGAAGGTTTTGCAGCAAAGCTTGGTTTATGCTGGTGTTGAATTGGAACTAAAACCAAAGAAAGATTTTGATGCTGAAAGAGCACAACAAACTGAGGAATTTGAGAATTCTCGTGCCCTCTTGGGTTCAAATCGTAAAAACAATTCAAATGCTGAATCAACCTATCCCAAAGGCTTAATCGTTTCCTTTACATTAAAGAGAGCTGGGGAAAACTCTGGGGAGGATATTGAGAAGGAAAGGGAACAAAAACCCACTGCTGCTACCTATAAAGACAACATGGATGTTGTCATGCGTGAGGATTTGAAGAGTGTCTTTCAAAAATTTGGCACCGTTAAGTTTGTTGATTTCAAGATAGGAGAAGAATCAGGATACATTCGATATGATGAACCTGAAGCAGCTCAGAAAGTACGTGCTGCTGCAGTGCTCTCTGAAGAAGGGGGTCTAACAGTAAAGAATTACATTGCTAATTTAGAACCCGTAACAGGTGAGGCCGAAAGGGAGTATTGGAGCCTGCTCCGTGGTAATCAAGAAAAACATAGAGGATTTAAGGGCAATCGAGGAAGGGGAGGAAAACAGAATAGAGGCGGGAAATTTGGTCGCCCCAGAGATAACGATTATGCAACCGGCCGTCCAAATAAAACTCAGAAAGTTGGAGCAGCATAA 1176 42.01 MGTASFDEETVKKVIRQVEFYFSDSNLPRDNFLKKTISESEDGLVSLALICSFSRMRSHLNLGDVKPEDVSEDTLKAVAEILRNSTTLKVSEDGKKIGRATELLKPEEVVEQVDIRTIAASPLEYDAKLEDVEAYFGQFAKVNSVRLPRHVAEKRVFCGTALIEYSTEEDAAKVLQQSLVYAGVELELKPKKDFDAERAQQTEEFENSRALLGSNRKNNSNAESTYPKGLIVSFTLKRAGENSGEDIEKEREQKPTAATYKDNMDVVMREDLKSVFQKFGTVKFVDFKIGEESGYIRYDEPEAAQKVRAAAVLSEEGGLTVKNYIANLEPVTGEAEREYWSLLRGNQEKHRGFKGNRGRGGKQNRGGKFGRPRDNDYATGRPNKTQKVGAA* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3145703 3151567 - Vvi4g328 Vvi4g328 785107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g328 391 Pfam RNA binding motif 267 359 IPR014886 GO:0003723
Vvi4g328 391 PANTHER LUPUS LA PROTEIN-RELATED 3 248 IPR045180 -
Vvi4g328 391 PANTHER LUPUS LA PROTEIN-RELATED 255 390 IPR045180 -
Vvi4g328 391 ProSiteProfiles xRRM domain profile. 225 371 IPR014886 GO:0003723
Vvi4g328 391 SUPERFAMILY Winged helix DNA-binding domain 6 105 IPR036390 -
Vvi4g328 391 Pfam La domain 14 84 IPR006630 -
Vvi4g328 391 Gene3D - 108 206 IPR012677 -
Vvi4g328 391 CDD LA_like_plant 10 99 - -
Vvi4g328 391 Gene3D - 2 104 IPR036388 -
Vvi4g328 391 SMART la 8 100 IPR006630 -
Vvi4g328 391 Gene3D - 212 359 IPR012677 -
Vvi4g328 391 SUPERFAMILY RNA-binding domain, RBD 107 193 IPR035979 GO:0003676
Vvi4g328 391 CDD RRM2_La_like 229 329 - -
Vvi4g328 391 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi4g328 391 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi4g328 391 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi4g328 391 MobiDBLite consensus disorder prediction 349 391 - -
Vvi4g328 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Vvi4g328 391 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Vvi4g328 391 SMART rrm1_1 117 189 IPR000504 GO:0003723
Vvi4g328 391 PANTHER BNAANNG34180D PROTEIN 255 390 - -
Vvi4g328 391 PANTHER BNAANNG34180D PROTEIN 3 248 - -
Vvi4g328 391 SUPERFAMILY RNA-binding domain, RBD 269 354 IPR035979 GO:0003676
Vvi4g328 391 MobiDBLite consensus disorder prediction 205 224 - -
Vvi4g328 391 CDD RRM1_La 117 189 - -
Vvi4g328 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 177 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g328 K11090 LA, SSB; lupus La protein - vvi:100250699 699.508
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33