Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g33 ATGGCGCAGGTCCTCCAAATCCAAGCTCAGCTGATCACCTCTCCAATCCCCTCCTCCGTCGTCGACCCAAACCTCATCGCCGTCAAGCTCATTGGCGCTTGCGCCGACCACGCTAACGTGCGCCAGGCCGCTCTCATCTTCGCCCACCTCGCCAGCCCCAATATATTCGCCCACAACGCCACTCTCAAAGCTTTAGCTCAAAACAGTCACTGGTTCCATGCAATCCAGTTCTTTAACCACCAAGTTTCATCGCCCAATGCCCCGAACCCAGATGAGTTCACTTTCACTTCTGTGCTCAAGGCCTGTGCTGGCCTTGCCCACGTTGTCAACGGCCAGAAAATCCACGCCATGGTCACCAAACAAGGGTTTGAATCCAATCTCTTTGTTCGGAATTCGCTCATAGATATGTATTTCAAAGCGGGTTATCTTTTGCTTGCACGGCATCTGTTCGATGAAATGTTTGTGAGAGATAGGAATGTGGTTTGTTGGAATGCCATGATTGCAGGGTATGCACAGAATGAGAAGTACAGTGATGCTATTGAGGTGTTCCGGATGATGCAACAATTCGGTGGTGTGGTGCCAAATGATGTTACCCTTGTTAGTGTGTTGCCGGCTTGCGCGCATCTTGGTGCACTTGATCTGGGGAAGTGGATTGATGGATTTATCAGTCGGAGAGAGATGGCCTTGGGCTTGTTCTTGGGGAATGCACTGGCAGATATGTATGCAAAGTGTGGATGCATAACGGAGGCTAGAAGGGTATTCAATAAGATGGAAGAGAGAGATGTGATCTCATGGAGTATAATCATATGTGGGTTGGCCATGTACGGACATGCAGATGAAGCTTTTGGATGCTTTTATGAAATGCTGGACTGTGGAGAAAAGCCAAATGATGTTGTTTTCATGGGATTGTTAACAGCATGTACTCATGCAGGGTTGGTCAAGAAGGGGCTCAATTGTTTCAATACTATGGACAAGGAGTATGGAGTCAGCCCAAAGGTTGAACATTATGGTTGTGTGGTTGATCTTCTCAGCCGTGCTGGTGAACTCGACAAAGCAGAGGATATGATCAGCTCAATGCCTATGAAACCCAATGTCATAATTTGGGGTGCATTGCTTGGTGGTTGTCGGATTTACAGGGACAGTGGAAGAGGACAGCGAGTCGTTCAACATATTCTTGAGCTAGATTCTGACCATTCTGGAAGCTATGTTTATCTCGCCAATGTTTATTCTTCAATGGGTAGATTAGATGATGCTGCAAAGTGCAGGTTGAGAATGCGAGAGAATGGGGTGCTGAAAACCCCTGGATGCAGCTGGATAGAGGTGGACAACACAGTACATGAGTTCTTCATGGGAGATTTATCACACCCAGAGTCTAACAAGATATATTCAATGATAAGAGAATTAATGTGGAAAATGAAGCTAGCTGGGTACAAACCCAAAACTGACCTCGTAGTGCATAGCATTGATGAAGAAGAGAAGGAGGATGCTTTGTCAATTCACAGTGAGAAGTTGGCAATTGCATTTGGGCTTATCAGCACTAGTGAAGGAACCACAATTCGAGTTGTTAAGAATCTACGAATTTGTAATGACTGTCATGATGCAGCAAAGATAATTTCTGGGATTGTGAAGCGGGAGATTATTGTGCGGGATCGTAGCCGCTTCCATCATTTTAAAGATGGGGCGTCTTTCCTACACCATACATTCAAATACCATTTTTAA 1719 45.9 MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGASFLHHTFKYHF* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 415711 418685 + Vvi4g33 Vvi4g33 784812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g33 572 Pfam E motif 378 440 IPR046848 -
Vvi4g33 572 Pfam E+ motif 445 472 IPR046849 -
Vvi4g33 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Vvi4g33 572 Pfam PPR repeat 263 292 IPR002885 -
Vvi4g33 572 Pfam PPR repeat 235 261 IPR002885 -
Vvi4g33 572 Pfam PPR repeat 131 154 IPR002885 -
Vvi4g33 572 Pfam PPR repeat 335 360 IPR002885 -
Vvi4g33 572 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN 158 529 - -
Vvi4g33 572 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN 1 157 - -
Vvi4g33 572 SUPERFAMILY TPR-like 136 423 IPR011990 GO:0005515
Vvi4g33 572 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 158 529 - -
Vvi4g33 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi4g33 572 Pfam DYW family of nucleic acid deaminases 476 561 IPR032867 GO:0008270
Vvi4g33 572 Gene3D Tetratricopeptide repeat domain 315 453 IPR011990 GO:0005515
Vvi4g33 572 Gene3D Tetratricopeptide repeat domain 214 314 IPR011990 GO:0005515
Vvi4g33 572 Gene3D Tetratricopeptide repeat domain 20 114 IPR011990 GO:0005515
Vvi4g33 572 Gene3D Tetratricopeptide repeat domain 115 213 IPR011990 GO:0005515
Vvi4g33 572 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 157 - -
Vvi4g33 572 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Vvi4g33 572 TIGRFAM PPR: pentatricopeptide repeat domain 235 262 IPR002885 -
Vvi4g33 572 TIGRFAM PPR: pentatricopeptide repeat domain 263 296 IPR002885 -
Vvi4g33 572 Pfam PPR repeat family 158 207 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g33 - - - vvi:104878976 903.279
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00165 . . . . . . . . . . Cmo01g01497 . . . . . . . Bhi09g02560 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014431 1 1 0 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 1 1 1 1 0 0 0 1 1 1 17