Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g332 ATGGACGAGCGGCTCCATGAGGCAGTTCTAAAGGGCGATGTATCGGCCTTCCTTGTTCTTGTTCAAGAAGACGAGGATATCCTCAAACAAGTAGTTCCCAGATCATCAAGCACCATTCTGCATTTAGCAGCAAGGTTGGGGCACCCTGAATTGGCAGCAGAGATATTGAAGTTAAGTCCTGAATTGGCAGCAGCGAGGAATGAAAAACTGGACACTCCTCTGCATGAAGCATGCAGAGAGGGGAGAGCAGAGATTGTGAAACTTCTGCTGGAGACCGATCCCTTGATCGCTGGCAAGGTAAACAGGGATAACGAGACTGCGCTGTATGTAGGGTGTGACAGAGGGAGGCTTGATGTAGTGAAGCAGCTTCTGAACCATCCATGGCTGTTGGCATTAGAATTGGATGGCTTCACTACTTCACTTCATCTTGCAGCTTCAAGGGGACATACAGATATAGTGAAGGAGATTCTAAAAGTACGCCCAGACTTCGCAAGGGAGAAGGACTTGGATGGATGCATACCATTGCACCTCGCTTGCAGCAAAGGCCACCTTGAGGTAACAAGTGAGCTTCTGAGATTAGACCCAGACCTCACTTCCTTACAAGACAAGGATGGTCTAACACCTCTGCATTGGGCAATTATCAAAGGGCACCTCAACATTATCGATAAGATACTTGCCATTGGCCTCCATTTAGCTCAGACGACAACTAAACATGGAGAGACAGTTTTACACCTAGGAGTAAAGAACAACAGGTATGAAGCAGTCCAGTACTTGATGGAGAAACTCAACTTCACTCAACTCCTTAACACCCCAGATAAAAATGGCAACACCATCTTGCATCTTGCTGCTGCTGGAAAACTTACCACTATGGTCAAGTACCTACTTGAGCTGGGTGTGGATGTCAATGCACAGAACTGCAAAGGTTTCACTTCTCTTGATGTTATTACATCTGATGCTAGTAACTCCAAGGCAGGACTTGAGATTGTGACTGCATTATGCCAGGCTGGGGCTAAGAGATGTAGCCAATTGTCACCTGCATCACCAGAAATTCAAGAAAACCATCAACCAACATCTGGAGTATTAAACAGCCTAAATGTAGCATCTCCTTGGCCAAAAGTGATGCCAGATTCTCCTGTCCAACATCACAACAAGAAGCATGACCAAAGCCGCAAAAAGCTGCTTGACCAGAATGAGGGTCTGCGCAATGCTAGAAACAAATTCACAGTTGTTGCAGTTTTAGTGGCAACTGTTACGTTTTCTGCAGGCATAAACCCTCCTGGAGGTTTTAATCAGGACACTGGGAAGTCCATGTTGGGGAAACAAACTCCTTTCAAGGTCTTCATGGTATGCAACATTCTAGCATTGTTCCTGTCTCTGAGCATAGTCATTGTTCTTGTCAGTGTCATTCCTTATCGGCGAACATCCATGATGAGGCTACTGGTTTTTACCCATAAAGTGATGTGGGTATCCATGATATTTATGGCAGCAGCTTACATGGCTGCTACATGGATGATTATACCTCCTGGACCAGGTAGCAGGTGGGAGTTTGCAGTATTGTTGTGTTTAGGGGGAGGGTGCACAATGGCCATATTTTTAATTACAGGGATGGTGCTAGTGAGGCAATTCAGAAAGTACCAATTGAGGAAAGTGAATGCGAAGACGTATGGAGGCCCAGACAACATCATCAGTCATGCCGGCGAGATGCAAATGATAAAGAGGCATGGCTATGAATCAACCTGTAACTCAGATGTTGATAGCTCTGATCAAGGGGAGCATATCTTTGTTTTGTCAAGAAATTTGTGA 1803 45.42 MDERLHEAVLKGDVSAFLVLVQEDEDILKQVVPRSSSTILHLAARLGHPELAAEILKLSPELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNRDNETALYVGCDRGRLDVVKQLLNHPWLLALELDGFTTSLHLAASRGHTDIVKEILKVRPDFAREKDLDGCIPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLTPLHWAIIKGHLNIIDKILAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQLLNTPDKNGNTILHLAAAGKLTTMVKYLLELGVDVNAQNCKGFTSLDVITSDASNSKAGLEIVTALCQAGAKRCSQLSPASPEIQENHQPTSGVLNSLNVASPWPKVMPDSPVQHHNKKHDQSRKKLLDQNEGLRNARNKFTVVAVLVATVTFSAGINPPGGFNQDTGKSMLGKQTPFKVFMVCNILALFLSLSIVIVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMIIPPGPGSRWEFAVLLCLGGGCTMAIFLITGMVLVRQFRKYQLRKVNAKTYGGPDNIISHAGEMQMIKRHGYESTCNSDVDSSDQGEHIFVLSRNL* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3182894 3185794 + Vvi4g332 Vvi4g332 785111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g332 600 Pfam Domain of unknown function 398 504 IPR026961 -
Vvi4g332 600 PRINTS Ankyrin repeat signature 205 220 IPR002110 GO:0005515
Vvi4g332 600 PRINTS Ankyrin repeat signature 290 304 IPR002110 GO:0005515
Vvi4g332 600 SUPERFAMILY Ankyrin repeat 5 334 IPR036770 -
Vvi4g332 600 ProSiteProfiles Ankyrin repeat profile. 69 91 IPR002110 GO:0005515
Vvi4g332 600 SUPERFAMILY MFS general substrate transporter 369 544 IPR036259 -
Vvi4g332 600 Gene3D - 265 355 IPR036770 -
Vvi4g332 600 ProSiteProfiles Ankyrin repeat profile. 204 236 IPR002110 GO:0005515
Vvi4g332 600 Pfam Ankyrin repeats (many copies) 266 313 IPR002110 GO:0005515
Vvi4g332 600 Gene3D - 136 264 IPR036770 -
Vvi4g332 600 ProSiteProfiles Ankyrin repeat region circular profile. 69 91 - -
Vvi4g332 600 ProSiteProfiles Ankyrin repeat region circular profile. 170 197 - -
Vvi4g332 600 ProSiteProfiles Ankyrin repeat region circular profile. 204 228 - -
Vvi4g332 600 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 14 553 - -
Vvi4g332 600 Gene3D - 2 135 IPR036770 -
Vvi4g332 600 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Vvi4g332 600 ProSiteProfiles Ankyrin repeat region circular profile. 274 305 - -
Vvi4g332 600 Pfam Ankyrin repeats (3 copies) 100 158 IPR002110 GO:0005515
Vvi4g332 600 Pfam Ankyrin repeats (3 copies) 175 261 IPR002110 GO:0005515
Vvi4g332 600 Pfam Ankyrin repeats (3 copies) 5 91 IPR002110 GO:0005515
Vvi4g332 600 ProSiteProfiles Ankyrin repeat profile. 274 306 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 136 165 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 35 64 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 204 233 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 69 102 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 238 266 IPR002110 GO:0005515
Vvi4g332 600 SMART ANK_2a 274 303 IPR002110 GO:0005515
Vvi4g332 600 PANTHER CASKIN 14 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g332 - - - vvi:100245624 1157.13
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g332 . . . . . . . . Cmo05g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011486 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 31