Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g333 ATGGAAGAATCTGGCAATGAGAGGGCTCATTCTGATGCTCCCACCGAGCATCAGGATGGAACTACTGATGTCAAGAAAGAAGAGGTTGAAGCATTACAGACCGAGGTAAAGCGTCGAGATGGTAAGCACGAATTACATCCAGTTTCACAATCTGCTGATCCCCAAAGTCAGGTCCGCTGCATTTCTTGTTTGAGCAAAACTAGTTGCCGAACTGTGCGCTCAAGGACAAAACTAATGAACATTATGATAGAAAAAGGGAGGCCCCAGGAAGTTCAGTCCATTTTGGATAGTATAATTGAAGGAGGTCATAAGCCATCCTTGGTAACATACACTACCCTCTTGGCTGCATTGACCATCCAGAAGCACTTCGATTCCATTCACTCAATTATCTCTCAGGTGGAAGAAAATGGAATGGAGCCTGATTCTATATTCTTTAATGCTGTTATAAATGCTTTTTCCGAATCTGGAAATATGCAGGAAGCCATGAAATACTTCTGGAAGATGAAGGAAAGTGGATCTAAGCCCACTACCAGCACTTTCAACACATTAATTAAGGGATATGGAATTGCTGGTGAGCCTGAAGAATCTCAGAAACTATTAGAGTTAATGTCTCAAGATGAAAATGTGAGACCCAATCTGAGGACTTATAATGTACTTGTAAGAGCATGGTGTAACAAGAAGAACATTATGAAGGCATGGAATGTGGTCTATAAGATGGTAGCTTCTGGTTTGCAACCCGATGCTGTTACTTACAACACAATAGCAACAGCTTATGCTCAGAATGGAGAGGCAAGTCAAGCTGAAGGGATCATTTTAGAGATGCAAAACAGTAATGTGCAGCCTAATGAGAGAACATGCTGTATCATCATAGGTGGCTACTGTAAAGAAGGGAAAATAAAGGAGGCTTTGCAGTTTGTCTACAGGATGAAGGATCTTGGGCTGCAGCCTAATCTTGTTGTTTTCAACTCACTGATCAAAGGCTTCATTGATGCTGTGGATAGAGATGGGGTCAACGAGGTTCTAACATTGATGGAAGAATTTGGGGTCAAACCAGATGTGATTACATTTAGCACCATCATGAATGCATGGAGTGCAGCAGGGTTCATGGATAAGTGCAGGGAAATCTTTGATGACATGGTGAAGGCCAGAATACAACCTGATGCACATGTATACAGCATCCTAGCTAAAGGTTATGTGCGTGCAGGAGAACCTGAGAAAGCTGAAGAAATCCTGAATGCCATGATTAAATCCGGTTTCCATCCTAATGTGGTGATCTTTACAACCATTATCAATGGATGGTGCAGTGCCGGGAGAATGGAGTATGCAATCAAGATTTTTGAGAAGATGTGTGAATGTGGAATAGCTCCAAATTTGAAGACTTTTGAAACCTTAATTTGGGGATATGGAGAAGCAAGACAGCCATGGAAATCAGAGGAAGTGCTCCAAATCATGGAAGAATTTAATGTTCAGCCTGAGAAAACTACTCTCTTGCTTGTCGCAGAAGCCTGGCGTGCAACCGGATTAAAGAAAGAGGCAAATAGAATATTGAGTGCTGTGAAAAATGAGGAAATGACCCATGAAACAGACAGAGAAGACAAGATACCAGTGGGGAGCTTGGAGAAACATTATCAAAAGCCAAGTGCCTCATTTCCAAACCAGTTACAGCTACCAAATTTAAGTTCATGGACTGCTACCAGATCCTTGTCTCTTACCCATAGTTGTACATTTGGGGCAAGATCACCAATTATCTGCCAGAAGCAGTCTCATGGCCAGCTTTGTATGTATAGTCAGCTTGCACATTCATGTCCACTGGTGTTCTTGAACTGA 1827 42.09 MEESGNERAHSDAPTEHQDGTTDVKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQKPSASFPNQLQLPNLSSWTATRSLSLTHSCTFGARSPIICQKQSHGQLCMYSQLAHSCPLVFLN* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3185997 3191025 - Vvi4g333 Vvi4g333 785112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g333 608 Gene3D Tetratricopeptide repeat domain 48 189 IPR011990 GO:0005515
Vvi4g333 608 Gene3D Tetratricopeptide repeat domain 277 366 IPR011990 GO:0005515
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vvi4g333 608 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 608 - -
Vvi4g333 608 MobiDBLite consensus disorder prediction 1 52 - -
Vvi4g333 608 MobiDBLite consensus disorder prediction 1 47 - -
Vvi4g333 608 Pfam Pentatricopeptide repeat domain 309 363 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi4g333 608 Gene3D Tetratricopeptide repeat domain 201 276 IPR011990 GO:0005515
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 211 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 249 283 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 145 176 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Vvi4g333 608 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vvi4g333 608 PANTHER OS01G0228400 PROTEIN 1 608 - -
Vvi4g333 608 Pfam PPR repeat 390 419 IPR002885 -
Vvi4g333 608 Pfam PPR repeat 215 244 IPR002885 -
Vvi4g333 608 Pfam PPR repeat family 421 468 IPR002885 -
Vvi4g333 608 Pfam PPR repeat family 246 295 IPR002885 -
Vvi4g333 608 Pfam PPR repeat family 140 187 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vvi4g333 608 Gene3D Tetratricopeptide repeat domain 367 556 IPR011990 GO:0005515
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Vvi4g333 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g333 K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1 - vvi:100267944 1204.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g333 Vvi11g333 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23