Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g339 ATGGACTTTCTCAGAGAAATAGAAGGGAAGAGAGCTCATGACCCTATTTTTAATGACAAGGCCATGAGCTGCGGCAGAAGTTTAATTCTAGGACCGGTGATCGTCGGAGCTGGACCGTCGGGGCTGGCCACGGCTGCGTGCCTGAAAGAGAAAGGAGTGCCCAGTGTAATTCTAGAGAGATCCAACCGCATAGCTTCTCTGTGGCAGCTAAATACCTACGATCGACTCTGCCTCCATCTCCCTAAGCAGTTCTGCGAACTCCCGCTGATGCCTTTCCCGGAGAATTTCCCGACTTACCCAACTAAGCAGCAGTTTATAGAGTACTTGGAGGCATACGCGGAGCGGTTCGATATACAGCCAAGGTTCAACGAGTCGTATCTGTGCCGATGGCTGATAGTGGCCACCGGAGAGAATGCAGAGGCGGTGGTGCCGGAGATTGAAGGGAGGAGAAAGTTTGGCGGGCCAATAGTGCATACAAGTTCGTATAAAAGCGGAGATGTGTACAGAGGGAAGAGAGTTTTGGTGGTTGGTTGTGGGAATTCAGGAATGGAGGTGTGTTTGGACCTCTGCAATCATAATGCTAGGCCTTCTCTTGTGGTCAGAGATTCAGTGCACATCCTACCACGACAGATGCTGGGGAAATCAACTTTTGGGCTGTCCATGTGGTTGCTCAAGTGGCTGCCCATGCGCCTTGTCGATCACCTCCTGCTGATCGTGTCTCGGTTCATGCTCGGTGACACGGCCAAATTCGGATTGGACCGCCCTAAATTGGGTCCCCTTGAACTCAAAAACTTGTCCGGAAAGACGCCGGTGTTGGATGTAGGGACACTTGCTAAGATCAAAAGTGGAGACATTAAGATATGTCCAGGCATCAGGCAACTGAAGTGTCATGCTGTGGAGTTTGTTGATGGAAGAACTGAGAATTTTGATGCTATAATCTTTGCAACTGGTTACAAAAGCAATGTACCATTTTGGCTAAAGGAGAGAGATTTGTTTTCAGAGAAAGATGGGCTACCTCGGAGGCCATTTCCAAATGGTTGGAAAGGCAATTGTGGGCTATATGCAGTGGGGTTCACTAAGCGCGGCCTGCTTGGCGCGTCAATGGACGCCAAACGAATCTCAGAAGACATTGAACGGTGTTGGAAAGCTGATGCAAAACGTCTTACAGTGAAATCACATACATGA 1185 49.37 MDFLREIEGKRAHDPIFNDKAMSCGRSLILGPVIVGAGPSGLATAACLKEKGVPSVILERSNRIASLWQLNTYDRLCLHLPKQFCELPLMPFPENFPTYPTKQQFIEYLEAYAERFDIQPRFNESYLCRWLIVATGENAEAVVPEIEGRRKFGGPIVHTSSYKSGDVYRGKRVLVVGCGNSGMEVCLDLCNHNARPSLVVRDSVHILPRQMLGKSTFGLSMWLLKWLPMRLVDHLLLIVSRFMLGDTAKFGLDRPKLGPLELKNLSGKTPVLDVGTLAKIKSGDIKICPGIRQLKCHAVEFVDGRTENFDAIIFATGYKSNVPFWLKERDLFSEKDGLPRRPFPNGWKGNCGLYAVGFTKRGLLGASMDAKRISEDIERCWKADAKRLTVKSHT* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3246966 3250173 - Vvi4g339 Vvi4g339 785118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g339 394 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 23 124 - -
Vvi4g339 394 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 124 388 - -
Vvi4g339 394 Pfam Flavin-binding monooxygenase-like 132 325 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi4g339 394 Pfam Flavin-binding monooxygenase-like 34 118 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi4g339 394 SUPERFAMILY FAD/NAD(P)-binding domain 33 206 IPR036188 -
Vvi4g339 394 PRINTS FAD-dependent pyridine nucleotide reductase signature 32 51 - -
Vvi4g339 394 PRINTS FAD-dependent pyridine nucleotide reductase signature 128 146 - -
Vvi4g339 394 PRINTS FAD-dependent pyridine nucleotide reductase signature 172 190 - -
Vvi4g339 394 Gene3D - 31 383 IPR036188 -
Vvi4g339 394 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 124 388 - -
Vvi4g339 394 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 23 124 - -
Vvi4g339 394 SUPERFAMILY FAD/NAD(P)-binding domain 170 379 IPR036188 -
Vvi4g339 394 PRINTS Pyridine nucleotide disulphide reductase class-II signature 31 53 - -
Vvi4g339 394 PRINTS Pyridine nucleotide disulphide reductase class-II signature 129 137 - -
Vvi4g339 394 PRINTS Pyridine nucleotide disulphide reductase class-II signature 168 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g339 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - vvi:100252539 800.816
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g339 Vvi11g343 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g339 . . . Bda03g00026 Bpe02g01196 . Bma04g00024 . Cmo05g00631 Cmo12g00219 . Cma05g00605 . Car12g00249 Sed01g1287 Cpe07g00228 . Bhi04g00822 Tan02g2580 Cmetu03g1256 . Hepe10g0344 . Lcy13g1389 . . . . . . . Cone4ag1539 Cone7ag1413 Cone17ag1107 Cone20ag0614 . . . Cme03g01726 Blo17g00055 Blo18g00069 . . Bpe14g00534 . Bma01g01332 Bma02g00070 . . . . Cma12g00265 . Car05g00547 Cpe11g00528 . . . . . . . . Cla08g01237 Cam08g1694 Cec08g1273 Cco08g1394 Clacu08g1391 . Cre08g1176 Lsi08g01100 . Chy03g01231 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83