Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g34 ATGTCGTGGCAAACCTATGTTGATGACCATCTCATGTGCGAAATTGAAGGCAATCATCTCACTGCCGCTGCTATCCTCGGCCAAGACGGCAGCGTTTGGGCTCAGAGTGCCACCTTCCCTCAGTTCAAGCCCGAAGAAATTACTGCCATAATGACTGATTTTGCTGAGCCTGGTACGCTTGCACCAACTGGCTTATACCTTGGTGGCACAAAGTATATGGTGATCCAAGGTGAACCAGGGGCTGTCATTCGAGGCAAAAAGGGCTCTGGTGGTGCCTGTATTAAGAAGACCATTCAGGCTTTGATCATTGGTATATATGATGAGCCTCTGACTCCTGGTCAGTGCAACATGATTGTTGAAAGGCTGGGTGATTATCTCATTGATCAGGGTCTTTAG 396 48.23 MSWQTYVDDHLMCEIEGNHLTAAAILGQDGSVWAQSATFPQFKPEEITAIMTDFAEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGSGGACIKKTIQALIIGIYDEPLTPGQCNMIVERLGDYLIDQGL* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 418733 421550 - Vvi4g34 Vvi4g34 784813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g34 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Vvi4g34 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Vvi4g34 131 PANTHER PROFILIN-2 1 131 - -
Vvi4g34 131 CDD PROF 2 130 IPR005455 GO:0003779
Vvi4g34 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Vvi4g34 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Vvi4g34 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Vvi4g34 131 SMART prof_2 1 131 IPR005455 GO:0003779
Vvi4g34 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Vvi4g34 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Vvi4g34 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g34 Vvi9g263 ECH
Vvi4g34 Vvi11g252 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g34 K05759 - vvi:100261121 271.937