Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g343 ATGGCCTCTGATTCCATTCGGAATCGCATCGATCAGTTTTTTTCTTCAAAGAAAAGGAAACCGCTATCTCCTGGTTTGAAGACTGGAAGAATCGAAAAAGATTCAAAAAGAGCAGTCGATGGTTCTCCCAGTAGCAAGGGCACCTTAGACAACTATTTGGTAACTTATCCGGATGATAATTCCACTGCTCGTGGTTCATCAGCAGGAAAAGGCCCAGTCAAAAGAAATTTGACATTGGAGATTAATTTGCCTTCTAAAGATGAAAATGAAAATGCCCTTTTATCAGGCCAATTGGGTCATGGAACTACCGAAGCATTTGGAGAAACTCATACGGAAAATTCCCGGGGTTTATCTCAGATGGGTGGTGTTGGAGTTGGAGAGCAATTGAAGGATTGCTCAGTCTCTGCACATGGTCCCGTGAACTCGGAACTTAAGCAAATTGCAGCTGACTTTTTATCTCTTTATTGCAGTGAATTTCCATCAAGTGCAAGTTTGCCATCTGGATTGAAAGTGAATGTGAATAAAAGATGTGGCAGTCCATCTCTGCAAGATGTGAAGAATGAGATTTCCAAGAAGAGGCATTGCATTGCCAATGCGGACCAGTCCCGGTTAGAAGGTGAAGATTCTTGTTTAAACGAGAATAATTATGAAGATGGGCAGCTTGGTCTTATTGTTAAACCTGTAACAGTTGGAAATGATGCCACTGAAGTTCAAGGAAGCTTGAGAAAAAGCAATGAAAGACTAAAATCAACTGTTAATATGACCGAGTGCTATACACCTGGTCCATTGACTGTTAATGCATTTGCTCATGAAACCCCCAATTCAATGCGTGGAAGCTCCATGTTTTCACCTGGAGAATCATTCTGGAATGAAGCAATTCAAGTTGCTGATGGTTTGTTTGCTCCAAAAACTGATGAGCAAATTAATGCTGCCAAGAGCGAATATGAGATGAAGAACTCATGCAATTTGAGAAATGCTGGCTGTGGGTTTAAGTTGAAGGAAATGTTGGTTGACGGTGACTGCACAGTTGAGGGTATGGAAATAGGTGTTTCTTCTGGATCATTAGGATATCGTGTGAAAGATTCAGATCAAGTATCCCCACTGCCTGTTAAACGATTTGACTTCTTGTTTGAGGAAAAGAACTTGGATGAAACAAATCCACCTCATTGTTCTGCTGATAAGCTGGATGTTATGGATGGTGAACAATCTGCTTGTGGTTCCGTGAATCATAAGGTTCTAAAAACCACTGGTATTACAAATGGAGGAATGAGTGAAGTAAAAGATATGAATTCAATTGATGCAGAAGCCAAAAGGGAAGTGGATTTATTGAGCCAAGAAAAGGATAACATCAAAGCTGATTCACCAGATTTGGGAATCACTAAATCCATTATTGCCTGTGAATGTGATGAAGCAAGTACTCCATCAAGTTTTGAGCCCCTGAAGGATAGTTTAGATCTTAGCAAATGGCTTCCTTCTGAGATATGCAACATATATAGAAAGAAAGGAATTTCAAAACTGTACTCTTGGCAGGTTGACTGCCTTAAGGTGGATGGCGTCTTGCAGAAAAGGAACCTTGTGTATTGTGCATCTACAAGTGCTGGCAAAAGTTTTGTTGCTGAAATTTTAATGTTGCGACGACTAATATCAACGGGAAAAATGGCACTTCTTGTACTTCCATATGTTTCAATTTGTGCAGAAAAGGCAGAGCATCTGGAAGTCCTCCTGGAACCACTTGGTAAGCATGTCCGTAGTTACTATGGAAATCAAGGTGGTGGAACACTTCCTAAAGACACTTCTGTAGCTGTATGCACAATTGAGAAGGCAAACTCTTTAATCAACAGATTGCTGGAAGAGGGTCGCCTGTCAGAAATTGGAATTATTGTAATAGATGAATTGCACATGGTTGGCGATCAGAATAGGGGTTATCTTTTGGAACTTCTGTTGACAAAGCTTCGTTATGCTGCTGGTGAAGGACATGTTGAATCAGTTAGTGGTGAGAGTTCAAATATGAGCACGGTTGCTGATTGGCTTCAAGCAGCATTGTACCAAACAGATTTCCGACCAGTTCCATTGGAGGAATACATTAAAGTTGGTAACACCATTTATGACAAGAAAATGGATATTATTAGGACAATATCGAAAACAGCTGATCTTGGTGGTAAAGATCCTGATCATATTGTGGAATTGTGCAATGAGGTTGTTCAGGAGGGTCATTCAGTGCTACTATTTTGCTCTAGTAGAAAAGGATGTGAATTTACTGCAAGGCATGTTTCAAAATTCCTCAAAAAATTCTCTACCAATGCCCATAACAATACTGGTGAGTTTGTTGATATTAGTTCAGCTATTGATGCCTTACGGAGATCTCCTGCGGGACTGGATCCTATACTGGAAGAAACTCTCCCTTCTGGTGTTGCCTATCACCATGCTGGCCTCACGGTTGAGGAAAGAGATATTGTCGAGACATGCTATCGCAAAGGGCTCCTACGTGTCTTAACTGCTACATCTACCTTAGCTGCTGGTGTTAACCTCCCTGCTAGGAGGGTCATTTTCCGACAACCAAGGATTGGTCGTGATTTTATTGATGGAACTAGGTACAAACAGATGGCTGGACGGGCTGGACGAACTGGAATAGATACAAAAGGGGAAAGTGTACTGATTTGCAAACCTGAGGAGGTCAAAAGAATTTGTGGACTTCTCAATGAGAGTTGTCCACCATTGTATTCTTGTCTCTCTGAAGATAAGAATGGAATGACTCATGCAATCTTGGAAGTTGTGGCTAGTGGAATTGTTCAAACTGCTAATGATATTAATCGATATGTTAGAAAATTTCTTGAATGGAATGAAGATACTAAGTTATACAGCACCACTCCTCTTGGACGGGCAGCTTTTGGCAGTTCTCTCTGTCCTGAAGAATCACTTGTTGTGCTGGATGATCTTTCAAGGGCACGAGAAGGATTTGTTCTTGCATCTGATTTGCATCTAGTTTACTTAGTGACACCCATTAATGTTGATGTTGAGCCAGATTGGGAATTGTTCTATGAAAGGTTCATGCAATTGTCTGCTCTTGACCAGTCAGTTGGCAATCGAGTTGGAGTGGTGGAACCATTTTTGATGCGCATGGCCCATGGTGCACCTATGTGTGCTTCAAACAAATCAAGAAATAATGGAAAAGGGTTGCATGACAAATTTGACAACCGACTTGGGATCACAAAATGTAGTTTGCTCTCAGATGAGCAAACACTTCGTGTTTGCAAGCGATTTTATGTTGCTCTCATCTTGTCAAAACTAGTGCAGGAAGTACCGGTGACTGAGGTTTGCGAAGCTTTTAAAGTGGCTAGAGGCATGGTTCAAGGCTTGCAAGAGAATGCTGGAAGGTTTGCGTCTATGGTTTCTTTGTTTTGTGAAAGGCTTGGCTGGAATGATTTGGAAGGCTTGGTTGCTAAGTTCCAAAATCGTGTTTCATTTGGAGTGAGAGCAGAGATCGTAGAGCTTACTACCATTCCATATGTTAAGGGTTCTCGAGCAAGAGCACTTTATAAAGCTGGCTTGCGTACACCTCTAGCAATTGCAGAAGCATCAATACCTGAGATAGTGAAAGCTCTGTTTGAATTTTCATCATGGGCTGCAGAAGGAAATTCAGTGCAACGAAATGTACAATTGGGAGTAGCCAAGAAGATTAAGAATGCTGCACGCAAAATTGTGCTTGATAAAGCTGAAGAAGCAAGGATTGCTGCTTTCTCAGCTTTCAAATCACTTGGGCTTAATGTTCCACAGTTTTCACGTCCTTTGTTGTTAATTGCTAATGACAATCCTAGCCAAGAAGCTGCAAGTACCTCTTCTGGGGAGGGTGCTACTAGTAGCTTTGTTGGTACAGAATGCATGAAATCAGGTAAGCCAGCTGTAGAAGGAAGTGAGAATTCTAATAAAGTTGCTTCAGAAATTGGAGTGGAGAAGTTAAAAAATATGTCAGATGTTATCTTGGGAACTGCAGGGGAGGTAAAATCAACTGGCCCCATACAGTGTAAATTTGGTGCTGAAAATCCTGCAGTACTGTCAATTCTCAATGATGAACTTAACAGCATTGTGGATCGAGAAAATGAATGTCTTGACAATAATGGCAAAGCCTATGAGAAGGGTCCTATTCATGCAACTAATACTCCTGGTGGGTTTGATTCTTTCTTAGATCTCTGGGATAGTGTGAGAGAATTCTATTTTGATATTCACTTCAACAAACAGTCTGAAGTAAATTCTCTTGCACCCTACGAAATACATGGCATAGCAATCTGTTGGGAAAATTCTCCTGTGTATTATATCAATCTTCCTAAGGATCTACTTTGCTCTGATGAAAGGAAAAATATTTACTTAACCATGAATGTATCTGATGACAAGCCAAACATTTTAGATGCAAATCATAGGTTGGAAGCAGCTAAATGGCGATGGAGCAAGGTTGGTAAGATAATGGGGAAAAAGGATGTCAGGAAATTTACTTGGAATTTGAAAGTTCAGATTCAGGTGCTAAAAAATCCTGCAGTTTCCATTCAAAAATTTGGTAGTCTGAATCTTGCAATGAGAACTATGGGACTTGAACTTATAGACAACTCCTACCTTATGTTGTCCCCAGTTTATATTGTGGATGGACTAGACATGTGTATTGTAACATGGATCCTTTGGCCTGATGAAGAGAGAAGCTCCAATCCAAATCTGGAGAAGGAAGTTAGGAAAAGATTATCCAGTGAGGCAGCAGCAGCTGCTAATCGGAGCGGAAGGTGGAAAAATCAGACTCGAAGAGCTGCCCATAATGGTTGCTGCCGTCGCGTTGCACAAACACGTGCCCTATGTTCCGTTCTATGGAAATTGCTTGTTTCTGAAGAACTTGTTGAAGTGCTTTTGAGAATTGAAATCCCATTGGTTACAATTCTTGCGGACATGGAAGTCTGGGGAATAGGTGTTGATATGGAGGGATGCATTCAGGCACGAAATGTGCTGGGAAAGAAGCTAAGGCATCTTGAAAAGGAAGCTTATGAGTTGGCTGGCATGACATTTTCATTGTATACAGCAGCAGATATTGCTAATGTTCTCTATGGACACTTGAAGCTGCCCATACCAGAGGGGCACAATAAAGGGAAGCAACATCCAAGTACTGATAAGCATTGCTTAGATTTGTTAAGGCATGAACATCCTATTATTCCAGTCATTAAAGAACACCGGACACTGGCAAAACTCTTAAACTGTACATTGGGTTCAATTTGTTCTCTGGCTAGGCTTTCTTTGCAGACGCAAAGATACACCCTGCATGGCCATTGGCTCCAAACATCAACAGCGACTGGACGCCTTTCAATGGAAGAACCTAACCTTCAGTGTGTTGAGCATGTGGTTGAGTTCAAAATGATCAAAGGTAACAAAGATGTATGCAATTCTGAAGCTGACCATTACAAAATTAATGCTCGTGACTTCTTCGTTCCTTCTCAGGAGAACTGGTTACTGTTAACAGCGGATTATTCCCAGATTGAACTGCGGCTAATGGCTCATTTTTCTAGGGACTCTTCATTAACTGAACTCCTTAGCAAGCCCCATGGTGATGTCTTTACCATGATTGCAGCAAAATGGACTGGGAAGCCAGAATCTGTTGTTGGCTACCAGGAGCGAGAACAGACCAAAAGGTTGGTCTATGGCATTCTTTATGGAATGGGTGCTAATACCCTTGCCAAACAGCTAGAATGTAGCTTAGGTGAAGCAGAAGAAAAAATTCGAAGTTTTAGAAGTTCTTTTCCTGGTGTTGCTTCCTGGCTTCATGAAGCAGTTGCATGTTGCTGTAAGAAAGGATATGTGAAGACACTTAAGGGAAGAAAGCGCTTCTTGTCAAAAATAAAATTTGGGACTAGTAAAGAAAAATTGAAAGCTCGGAGGCAAGCTGTGAATTCCATTTGTCAGGGATCCGCTGCCGACATAATCAAGATTGCAATGATAAATATTCATTCTGTGATTGCTGAAGGAGTAGATGAGCCTAATTCTAGCACAGAACTTCCAGCAAAATTTCACATGCTGAAGGGGCGTTGCCGGATAATTCTACAGGTTCATGATGAACTAGTACTTGAAGTTGATCCTTCTGTTATGAAGGAAGCTGGATTGTTATTAAAAATGACCATGGAAAATTCTACCTCACTGCTGGTCCCTTTGCTTGTGAAGCTAAAGGTTGGAAGAACATGGGGTTCTTTGGAGCCTTTCCATGCTGAACCACTTGGAGATGAAATGCTTGTTCTGCAAAAAGATGTTTGA 6276 41.16 MASDSIRNRIDQFFSSKKRKPLSPGLKTGRIEKDSKRAVDGSPSSKGTLDNYLVTYPDDNSTARGSSAGKGPVKRNLTLEINLPSKDENENALLSGQLGHGTTEAFGETHTENSRGLSQMGGVGVGEQLKDCSVSAHGPVNSELKQIAADFLSLYCSEFPSSASLPSGLKVNVNKRCGSPSLQDVKNEISKKRHCIANADQSRLEGEDSCLNENNYEDGQLGLIVKPVTVGNDATEVQGSLRKSNERLKSTVNMTECYTPGPLTVNAFAHETPNSMRGSSMFSPGESFWNEAIQVADGLFAPKTDEQINAAKSEYEMKNSCNLRNAGCGFKLKEMLVDGDCTVEGMEIGVSSGSLGYRVKDSDQVSPLPVKRFDFLFEEKNLDETNPPHCSADKLDVMDGEQSACGSVNHKVLKTTGITNGGMSEVKDMNSIDAEAKREVDLLSQEKDNIKADSPDLGITKSIIACECDEASTPSSFEPLKDSLDLSKWLPSEICNIYRKKGISKLYSWQVDCLKVDGVLQKRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEIGIIVIDELHMVGDQNRGYLLELLLTKLRYAAGEGHVESVSGESSNMSTVADWLQAALYQTDFRPVPLEEYIKVGNTIYDKKMDIIRTISKTADLGGKDPDHIVELCNEVVQEGHSVLLFCSSRKGCEFTARHVSKFLKKFSTNAHNNTGEFVDISSAIDALRRSPAGLDPILEETLPSGVAYHHAGLTVEERDIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYKQMAGRAGRTGIDTKGESVLICKPEEVKRICGLLNESCPPLYSCLSEDKNGMTHAILEVVASGIVQTANDINRYVRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLVVLDDLSRAREGFVLASDLHLVYLVTPINVDVEPDWELFYERFMQLSALDQSVGNRVGVVEPFLMRMAHGAPMCASNKSRNNGKGLHDKFDNRLGITKCSLLSDEQTLRVCKRFYVALILSKLVQEVPVTEVCEAFKVARGMVQGLQENAGRFASMVSLFCERLGWNDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASIPEIVKALFEFSSWAAEGNSVQRNVQLGVAKKIKNAARKIVLDKAEEARIAAFSAFKSLGLNVPQFSRPLLLIANDNPSQEAASTSSGEGATSSFVGTECMKSGKPAVEGSENSNKVASEIGVEKLKNMSDVILGTAGEVKSTGPIQCKFGAENPAVLSILNDELNSIVDRENECLDNNGKAYEKGPIHATNTPGGFDSFLDLWDSVREFYFDIHFNKQSEVNSLAPYEIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWSKVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMRTMGLELIDNSYLMLSPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQTRRAAHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEKEAYELAGMTFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQCVEHVVEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWLLLTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGEAEEKIRSFRSSFPGVASWLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQAVNSICQGSAADIIKIAMINIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTMENSTSLLVPLLVKLKVGRTWGSLEPFHAEPLGDEMLVLQKDV* 2092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3297142 3326185 - Vvi4g343 Vvi4g343 785122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g343 2091 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 649 IPR014001 -
Vvi4g343 2091 SUPERFAMILY DNA/RNA polymerases 1625 2072 IPR043502 -
Vvi4g343 2091 CDD DEXHc_POLQ-like 490 688 - -
Vvi4g343 2091 Gene3D - 1382 1644 IPR036397 GO:0003676
Vvi4g343 2091 SMART ultradead3 502 709 IPR014001 -
Vvi4g343 2091 Pfam DEAD/DEAH box helicase 519 657 IPR011545 GO:0003676|GO:0005524
Vvi4g343 2091 PRINTS DNA-polymerase family A (pol I) signature 1764 1786 IPR002298 GO:0003887|GO:0006261
Vvi4g343 2091 PRINTS DNA-polymerase family A (pol I) signature 1882 1907 IPR002298 GO:0003887|GO:0006261
Vvi4g343 2091 PRINTS DNA-polymerase family A (pol I) signature 1919 1930 IPR002298 GO:0003887|GO:0006261
Vvi4g343 2091 PRINTS DNA-polymerase family A (pol I) signature 1941 1952 IPR002298 GO:0003887|GO:0006261
Vvi4g343 2091 PRINTS DNA-polymerase family A (pol I) signature 1973 1989 IPR002298 GO:0003887|GO:0006261
Vvi4g343 2091 SMART polaultra3 1812 2037 IPR001098 GO:0003677|GO:0003887|GO:0006260
Vvi4g343 2091 SMART helicmild6 794 876 IPR001650 -
Vvi4g343 2091 Coils Coil 433 453 - -
Vvi4g343 2091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 690 IPR027417 -
Vvi4g343 2091 MobiDBLite consensus disorder prediction 41 67 - -
Vvi4g343 2091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 904 IPR027417 -
Vvi4g343 2091 Pfam DNA polymerase family A 1655 2070 IPR001098 GO:0003677|GO:0003887|GO:0006260
Vvi4g343 2091 CDD SF2_C_Ski2 687 888 - -
Vvi4g343 2091 Pfam Helix-turn-helix domain 881 944 IPR046931 -
Vvi4g343 2091 PANTHER DNA POLYMERASE THETA 506 2076 - -
Vvi4g343 2091 Gene3D - 1773 2069 - -
Vvi4g343 2091 Coils Coil 1902 1922 - -
Vvi4g343 2091 Gene3D - 488 688 IPR027417 -
Vvi4g343 2091 MobiDBLite consensus disorder prediction 1 75 - -
Vvi4g343 2091 MobiDBLite consensus disorder prediction 25 40 - -
Vvi4g343 2091 Gene3D - 695 896 IPR027417 -
Vvi4g343 2091 Pfam Helicase conserved C-terminal domain 725 876 IPR001650 -
Vvi4g343 2091 Gene3D - 1836 1980 - -
Vvi4g343 2091 Gene3D - 1037 1180 - -
Vvi4g343 2091 PANTHER DNA POLYMERASE I 506 2076 IPR002298 GO:0003887|GO:0006261
Vvi4g343 2091 CDD DNA_pol_A_theta 1647 2072 - -
Vvi4g343 2091 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 944 IPR001650 -
Vvi4g343 2091 SUPERFAMILY Sec63 N-terminal domain-like 1079 1193 - -
Vvi4g343 2091 Gene3D Taq DNA Polymerase; Chain T, domain 4 1647 1757 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g343 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7] - vvi:100264582 4053.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g343 . . . . Bpe02g01197 . . . Cmo05g00632 . . Cma05g00730 . . . . . Bhi04g00821 . . . . . . . . . . . . . . . Cone17ag1106 . . . . Cme03g01725 . Blo18g00068 . . . . Bma01g01331 . . . . . . . Car05g00549 Cpe11g00651 . . . . . . . . Cla08g01238 Cam08g1696 Cec08g1275 Cco08g1396 Clacu08g1393 . Cre08g1178 Lsi08g01101 . Chy03g01230 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007306 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 35