Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g347 ATGCCTATAAAAGCTATCCTCATTGAAGGCCAAGACATCATCCCATCTTGTGGGCTCAAGACTCGGCCACTTAATGGTTGGGGTGGGTATGGGCTTTTGGTTAGTTTGGCTTTGATTTGTTCATTTTCTCGGATGAGAAGTCATCTTAATTTGGGGGACGTTAAGCCCGAAGATGTTTCAGAAGACACCTTGAAGGCCGTGGCTGAAATTCTGAGAAATTCTACTACCCTTAAGGTTTCTGAAGATGGGAAAAAGATTGGCAGGGCTACTGAACTTTTAAAGCCAGAAGAGGTGGTAGAGCAAGTGAACATAAGGACAATTGCAGCATCACCCCTAGAATATGATGCAAAGCTTGAAGATGTGGAGGCTTACTTTGGTCAAATTGCCAAGGTTAATAGTGTTAGGCTGCCCCGTCATGTTGCAGAGAAAAGGGTATTTTGTGGTACGGCCCTAATTCAATACTCAACTGAGGAAGATGCTGCGAAGGTTTTGCAGCAAAGCTTGGTTTATGCTGAAGGTCTAATTTCTGTCGATGCTTTGGCTCCCTCTTGTATTGGTGTTCACGTCCATTTCGATAAATTCTCTCAACCCGCCGGAGAAGAGGCTCAAGTAGATGACTCAAAAATAGGTAACTTCTTCTTGGAAACAGACCTGCATCCAGGTAAAAAAATGAAGCTGAACTTGGCCACAACTACAAATGGAGCTGTTTTCTTGCCTCATCAAGTTGCTGAATCCATGCCCTTTTCATCCAACAAGCTACCCGAAATCTTGAACCGGTTTTCCTGA 786 43.89 MPIKAILIEGQDIIPSCGLKTRPLNGWGGYGLLVSLALICSFSRMRSHLNLGDVKPEDVSEDTLKAVAEILRNSTTLKVSEDGKKIGRATELLKPEEVVEQVNIRTIAASPLEYDAKLEDVEAYFGQIAKVNSVRLPRHVAEKRVFCGTALIQYSTEEDAAKVLQQSLVYAEGLISVDALAPSCIGVHVHFDKFSQPAGEEAQVDDSKIGNFFLETDLHPGKKMKLNLATTTNGAVFLPHQVAESMPFSSNKLPEILNRFS* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3339975 3350798 + Vvi4g347 Vvi4g347 785126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g347 261 Gene3D - 96 177 IPR012677 -
Vvi4g347 261 PANTHER LUPUS LA PROTEIN-RELATED 28 175 IPR045180 -
Vvi4g347 261 PANTHER LA RIBONUCLEOPROTEIN, PUTATIVE-RELATED 28 175 - -
Vvi4g347 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 231 IPR000504 GO:0003723
Vvi4g347 261 Gene3D - 20 95 IPR036388 -
Vvi4g347 261 ProSiteProfiles BURP domain profile. 212 261 IPR004873 -
Vvi4g347 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 166 IPR000504 GO:0003723
Vvi4g347 261 SUPERFAMILY RNA-binding domain, RBD 97 165 IPR035979 GO:0003676
Vvi4g347 261 Pfam BURP domain 212 261 IPR004873 -
Vvi4g347 261 SMART la 11 89 IPR006630 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g347 K11090 LA, SSB; lupus La protein - vvi:100250699 262.307
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015418 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5