Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g36 ATGGAATCTTCCAATAATGCTTCGACGACGAAAGTGATTACCGGCGACGCCGGATATGTACTTGAAGATGTTCCTCATTTGAATGATTACATCCAAGGGCTTCCCACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAAGCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAGATCGTTTGTCACAAGAATAGTCCAAGAGGGACACATTTCCGACGGGCAGGGCCTCGCCAAAAGGTGTATTTTGAGTCAGATGAAGTGCACGCATGTATTGTAACATGTGGTGGTCTGTGCCCTGGGCTCAACACAGTCATCAGGGAAATTGTGTGTGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGATGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAGGTTGTGAATGACATCCATAAACGTGGTGGTACTGTCCTTGGCACATCAAGAGGAGGCCATGATACCTCAAAGATAGTTGACAGCATTCAGGATCGTGGGATTAATCAGGTTTATATAATTGGAGGTGATGGAACACAGAAAGGAGCATCTGTGATTTTTGAGGAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACAATTGATAATGACATTCCAGTTATTGACAAATCGTTTGGTTTTGATACTGCTGTTGAAGAAGCACAGCGTGCCATTAATGCGGCACATGTTGAATCTGAAAGTATTGAGAATGGTATTGGCATGGTGAAGCTAATGGGACGCTACAGTGGATTCATTGCGATGTATGCTACACTTGCCAGTCGAGATGTAGACTGTTGTTTGATTCCAGAGTCACCATTCTATCTTGAAGGGAAAGGTGGACTTTTTGAATTTATAGAAAGACGTCTCAAAGAAAATGGACACATGGTTATTGTGATGGCTGAAGGAGCAGGACAGGAGCTTCTGTCAGAGAGCTTACTTTCCATGGGGCAAGATGCTTCAGGAAACAATCTGCTCCAAGACGTTGGACTCTGGATGTCTCATAGAATCAAGGATCATTTTGCAAGACAGCGTAAGATTGCCATTAATCTGAAGTATATAGATCCTACATACATGATCCGTGCTATTCCAGGCAATGCATCTGACAATGTGTACTGCACACTCCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGTTACACTGGCTTCACGATTGGGATTGTCAATGGAAGACATGCATACATTCCTTTCCATCGCATCAATGAGAGTCGGAACAAGGTTGTGATAACCGACAGGATGTGGGCAAGGCTCCTTTCGTCAACAAACCAGCCAAGCTTCCAGAACCCCAAAGATGTTGCTGAAGTCAAAAAAGAGGAAGCACCTGCCACTGGGTTGCTGGATGGGGATAACTCTAAAGATGACCACAAGCCAGTTGACCAAAAAGCATAA 1467 44.31 MESSNNASTTKVITGDAGYVLEDVPHLNDYIQGLPTYPNQLQTNPAYSVVKQYFVNVDDSVAQKIVCHKNSPRGTHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVCGLSHMYGVTRILGIDGGYKGFYSRNTIPLTPKVVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIFEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVESESIENGIGMVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIERRLKENGHMVIVMAEGAGQELLSESLLSMGQDASGNNLLQDVGLWMSHRIKDHFARQRKIAINLKYIDPTYMIRAIPGNASDNVYCTLLAQSAVHGAMAGYTGFTIGIVNGRHAYIPFHRINESRNKVVITDRMWARLLSSTNQPSFQNPKDVAEVKKEEAPATGLLDGDNSKDDHKPVDQKA* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 458258 466276 + Vvi4g36 Vvi4g36 784815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g36 488 MobiDBLite consensus disorder prediction 449 488 - -
Vvi4g36 488 PRINTS ATP-dependent phosphofructokinase family signature 97 116 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g36 488 PRINTS ATP-dependent phosphofructokinase family signature 181 197 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g36 488 PRINTS ATP-dependent phosphofructokinase family signature 214 231 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g36 488 PRINTS ATP-dependent phosphofructokinase family signature 232 250 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g36 488 PRINTS ATP-dependent phosphofructokinase family signature 253 269 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g36 488 PRINTS ATP-dependent phosphofructokinase family signature 310 322 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g36 488 Pfam Phosphofructokinase 96 400 IPR000023 GO:0003872|GO:0006096
Vvi4g36 488 SUPERFAMILY Phosphofructokinase 29 460 IPR035966 GO:0003872|GO:0006096
Vvi4g36 488 PIRSF ATP_PFK_TP0108 1 457 IPR012004 GO:0003872|GO:0005524|GO:0006096
Vvi4g36 488 MobiDBLite consensus disorder prediction 457 488 - -
Vvi4g36 488 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 24 453 IPR012004 GO:0003872|GO:0005524|GO:0006096
Vvi4g36 488 Gene3D - 89 279 - -
Vvi4g36 488 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 3 478 - -
Vvi4g36 488 PANTHER - 3 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g36 K00850 pfkA, PFK; 6-phosphofructokinase 1 [EC:2.7.1.11] - vvi:100245746 986.867
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g36 Vvi11g242 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g36 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g00943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000435 3 2 4 4 3 4 4 4 4 4 5 4 3 5 4 4 4 7 4 4 4 3 3 3 5 4 4 7 5 3 121