Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g361 ATGAGTCTTTTACTTATAATGGAAGGTGAACCTGAGCCTTATATAGGCAAACTTATAAAGATATGGGAATATCCAGATAAGGAAAAGAAAATAAAGGTTCTATGGTTCTTCCACCCTAGTGAGATTTTGAAATGGCTTGGAGATGGCGAGACAATCAAGAATGAGTTATTTTTGGCCTCTGGTGAAGGTGTTGGTCTAGCAAATGTTAATCCTCTGGAAGCGATTGCTGGCAAGTGTAATGTTGTTTGTATCTCGAAGGACAGTCGAAATCCACAACCCTCAAATGAAGAACTTCAAATGGCTGACCATGTATTTTACCGTACATTTGATGTTGGAAATTGTACAATATTAGATAAGATCGATGACAAAATTGCTGGGGTTGAAGTTGAGTTTATATTTAACCGAAGGGTGTGTCAGAATTCTAATGAGGTTCCAAAAATGGATTCAAATCGGAAAGAAGATATCGGGAGAGTTGTAGCAAGTAGTGAAACACTTCAACTTCCTGAGCAAAACTCATCTGGAGAAGACAAAGATCTAAAGATAGATGGAAATTCTAAGGATGCTTTGGCAAATGAAAATGTTGATGTGAAGGTTTCATTGGTTGAACATAAATCTTCACTTGGAGGAAAGCATGCTTCCGATGCTGATATGGTTTTGGATAACATGACTAATATTAGTGTTGAACGGGAAAATATTGTTGGTGATGGTTCCAAATTGCAGGTTGATTCTGTTAAATATGATGATAAAGTGGGTAAAGTTCTTGTCAATCAAGTTGAAGTTGAGGAAAAAGTAAAATCTACCAGGGATTCTGGTTTATTGGATAGTAGGCCTTCTAAGAGAGCAAAGGTCAGTAGTTCCACTGAACTATCCGAGGATAGGAACAACCGTAGTTTGCAAAAGTCAAATATTGATTCTCATGTGAAAGAAATGAAAGCTTCAGTATCAACTGTCACTACCACTAAAGATAAAACAAAATTAGATCTTGTTAAGGATTCTCCCTCACTGGAGAAGGAAGCATCCAAGAAACTAAAGTCATATGAGAAGATGACGAAACTTTCCAATGGCAATTTGATTAAAGCATTTGCTAGACGGTCTCCAAGCGTGGACACCAAAATTGAGGGCCAAATAATGGAGGTCACCCGAAGACCTAATGCTGTAAGTTGTATCCAGTCTTCTTCTGGGCCGACGTCTTTGGAGGACCCTAGGTGGGTCAAGGCTATGGAGGCCTTCGTGGCGCCTGGGCCGACTAGGCTGGACGATTGCCGAGACCCACCCCAGTCTTTGGAGGGGAACAAAGCCCACATTGGTGTGGCTCTTCCCTCAGATAGAAGCAGATGGTTTAGGGGACTTCCTTGGGAAGAAAGAATGCAGACTGCCCATCAGCAAGGAACACTTGTCCTACTGCAAAATTTGGATCCAGCATACACCTCAGCAGAAGTGGAGGATATTGTCTGGCATGGCTTTAAGGAATCTTGTACAGCAAGGATGATACAACACACGGCAATTTCTAGCCCACATTCTGGTCAAGCTTTTGTTATTTTCAAAACAAGAGATGCAGCAGTGTCGGCTATTAGAAAATTAGAAGAAGGATGCTTACTTCTATCAAATGGGAGGCCTCTTGTTGGCAGCTTTGGAACTCCTTGCTTCCCAGGGAAGCAGTCCACATTTGTTGGTCATCTCTCTATCGATAAGGTTAAAGTCCAAATGCAACGGGAGATGAAGCAAGCTGTATCCACTTCACACTGTTCACAGCCTAACACAATTGAATATGAGATGGCCATGGATTGGTGCTTACAACAAGAAAGATCAGATAGCTGTTGGAAAAAGTTGTATAAGAGACAAGGGGATGAGTTGAGAAAGCTCAAAGCTAGTTTGAAATCCAAATAA 1887 41.02 MSLLLIMEGEPEPYIGKLIKIWEYPDKEKKIKVLWFFHPSEILKWLGDGETIKNELFLASGEGVGLANVNPLEAIAGKCNVVCISKDSRNPQPSNEELQMADHVFYRTFDVGNCTILDKIDDKIAGVEVEFIFNRRVCQNSNEVPKMDSNRKEDIGRVVASSETLQLPEQNSSGEDKDLKIDGNSKDALANENVDVKVSLVEHKSSLGGKHASDADMVLDNMTNISVERENIVGDGSKLQVDSVKYDDKVGKVLVNQVEVEEKVKSTRDSGLLDSRPSKRAKVSSSTELSEDRNNRSLQKSNIDSHVKEMKASVSTVTTTKDKTKLDLVKDSPSLEKEASKKLKSYEKMTKLSNGNLIKAFARRSPSVDTKIEGQIMEVTRRPNAVSCIQSSSGPTSLEDPRWVKAMEAFVAPGPTRLDDCRDPPQSLEGNKAHIGVALPSDRSRWFRGLPWEERMQTAHQQGTLVLLQNLDPAYTSAEVEDIVWHGFKESCTARMIQHTAISSPHSGQAFVIFKTRDAAVSAIRKLEEGCLLLSNGRPLVGSFGTPCFPGKQSTFVGHLSIDKVKVQMQREMKQAVSTSHCSQPNTIEYEMAMDWCLQQERSDSCWKKLYKRQGDELRKLKASLKSK* 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3516690 3537291 + Vvi4g361 Vvi4g361 785140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g361 628 MobiDBLite consensus disorder prediction 264 304 - -
Vvi4g361 628 PANTHER PROTEIN ANTI-SILENCING 1 441 627 - -
Vvi4g361 628 PANTHER PROTEIN ANTI-SILENCING 1 5 385 - -
Vvi4g361 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 547 IPR000504 GO:0003723
Vvi4g361 628 SUPERFAMILY RNA-binding domain, RBD 460 539 IPR035979 GO:0003676
Vvi4g361 628 CDD RRM_SF 466 540 - -
Vvi4g361 628 Gene3D - 452 546 IPR012677 -
Vvi4g361 628 Gene3D - 2 118 IPR043151 -
Vvi4g361 628 MobiDBLite consensus disorder prediction 160 181 - -
Vvi4g361 628 PANTHER PROTEIN ANTI-SILENCING 1 5 385 - -
Vvi4g361 628 PANTHER PROTEIN ANTI-SILENCING 1 441 627 - -
Vvi4g361 628 MobiDBLite consensus disorder prediction 285 304 - -
Vvi4g361 628 ProSiteProfiles BAH domain profile. 1 120 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g361 - - - vvi:100852811 1050.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43