Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g365 ATGAATAGCTTTTCTTCTTTAGACACTGTTTATGCGAGCCCCAACAGTGGAAATGGAGATTGTGATGACAAGGCTCTTCGTTGGGCTTCATTGCAGAGGATTCCGACCTATTCTAGAGCTCGGAGGTCGTTGTTTCGGAACATTTCTGGGGAATTATCGGAGGTTGAACTGTGTAAGCTCGACGTTTATGAGCGCAGGCTCGTGGTGGATCGGTTGGTTAGGGCTGTCACCGAAGACCCAGAGCTGTTTTTTGATAAAATTAGAAGGAGATTTAAAGATGTTGGTCTGGAATTTCCAAAAGTCGAAGTTCGATTTGAGCACCTGAAGGTCAATTCTTTTGTTCATGTCGGAAGCAGAGCACTGCCTACAATCCCCAATTTCATTTTCAACACGACTGAGGCTTTCTTGAGGCAGTTGAGGATTTTCCCTGGAGAAAGGAAGAAGCTATCAATTTTAGACGACATTAGTGGTGTTATTAGACCTTCAAGATTGACATTGCTTTTGGGTCCTCCGAGCTCTGGAAAGACAACATTGCTTTTGGCACTTGCTGGGAGACTTGGAACTGGTCTGCAGATGTCAGGGAGAATCACATACAACGGACACGAGCTTAGGGAGTTTGTTCCGCAAAGAACTTCAGCTTATGTAAGTCAGCAGGACTGGCACGTTGCAGAAATGACAGTCAAGGAGACTCTTCAGTTCTCGAGACGTTGTCAAGGTGTTGGATTCAAATATGATATGCTTTTGGAACTTCTAAGAAGAGAGGAGAATGCTGGGATAAAACCTGATGAAGATCTAGATATATTTATCAAGGCATTAGCACTGGGGGAACAGAAAACAAGCCTTGTTACTGAGTATATTATGAAGATTTTAGGATTGGACCCTTGTGCGGACACATTGGTGGGAGATGAAATGCTCAAAGGGATCTCTGGGGGTGAAAAGAAGCGGCTTTCTACAGGTGAAATGTTAGTGGGTGCATCTACAGTATTGTTCATGGATGAGATATCAACCGGGCTTGATAGTTCAACTACGCATCAAATTATCAAGTACCTTAGGCATTCAACTCAAGCACTTAATGGGACAACAGTCATATCTCTCTTGCAACCAGATCCTGAGACTTATGAGCTGTTTGATGATATCATTCTTTTGGCGGAAGGTCAGATTGTGTACCAGGGACCAAGCAAGGCTGCTCTTGAGTTCTTTGAACTTATGGGGTTTCAGTGTCCAGATAGGAAAAATGTGGCTGATTTTTTGCAAGAAGTCATATCAGAAAAAGATCAAGAACAGTATTGGTCCTTTCCTGATCGCCATTACCAATATGTACCTGTGGCAAAGCTTGCAGAAGCTTTTCGATCATTTCATGCCAGAAAATCTTTGTTCCAGTTGCTGGCTGTACCTATTGATGGATGCTGTAGTCACCCTGCAGCGCTCTCAACATTTACTTATGGTGTGAAGAGGGCTGAGCTTCTCAAGATGAATCAAATTCTTGAAGCTCACCCTAATTCAATTAAACAAATTCTAAATACTGATACAAGAGCCATGGGGTCTATTTTGCAGCTTCTTTTTGTTGTTGTGATCATGGTGACTGTATTTTTTCGAACAACCATGCATCATAATACACTTGATGATGGCGGTGTTTATCTTGGTGCCCTCTACTTTGCAATAGTTATGATTCTCTTCAATGGCTTTACGGAGGTCCCAATGTTAGTAGCCAAGCTTCCAGTTCTCTACAAGCATAGAGACTTGCGCTTCTATCCATGCTGGGTCTATACAATTCCTTCTTGGTTTTTGAGTATTCCATCTTCAATTCTAGAGTCCTGCATATGGGTGGCAGTTACTTATTATGTGGTTGGATTTGATCCTCAAATAACCAGATGCCTTAAGCAGGCTTTGTTATATTTCTCTTTGCACCAGATGTCTATTTCTCTTTTCCGCATCATGGCATCCTTGGGACGAAATATGATAGTTGCTAACACCTTTGGATCTTTTGCAATGTTGGTGGTCATGGCTCTGGGAGGATTTATCCTTTCAAGAGATAGCATTCCCAATTGGTGGATTTGGGGTTATTGGTTTTCCCCTTTGATGTATGCTCAAAATGCGGCTTCTGTGAATGAATTCCTTGGCCATTCTTGGGACAAGAGAGCTGGGAACCACACTACATTTTCTTTAGGGGAGGCATTATTGAGAGGCCGCAGTTTATTTCCAGAGAGCTACTGGTACTGGATTGGTGTGGGTGCTTTGCTTGGCTACGCAATTTTGTTCAACATCCTGTTCACACTCTTCTTGACTTACCTGAACCCCCTTGGGAGGCGACAAGTTGTTGTTTCTAAAGAAAAGCCTCTCAATGAAGAGAAGACAAACGGCAAACATGCTGTCATTGAGCTAGGAGAATTTTTGAAGCATTCACACTCATTTACTGGCAGAGACATTAAAGAACGCAGAGGCATGGTCCTTCCATTTCAACCGCTCTCCATGTCCTTCCACGACATTAATTATTATGTGGATGTCCCAGCGGAACTGAAACAGCAGGGTGCACTGGAAGACCGATTACAGTTGCTAGTTAATGTTACTGGAGCATTTAGGCCAGGCGTGCTTACTGCATTAGTTGGAGTCAGTGGTGCTGGTAAAACTACCCTCATGGATGTTTTAGCTGGTAGAAAAACAGGGGGGGTTATTGAAGGGAGCATACGTATTTCTGGTTATCCCAAAAGGCAAGAGACCTTTGCAAGGATTTCCGGCTATTGTGAGCAGAGTGATGTTCATTCTCCATTCTTGACTGTCCATGAATCACTTCTATTCTCTGCCTGTCTCCGGCTACCTTCCCATGTTGACTTGAAAACACAGAAGGCTTTTGTTAGTGAGGTTATGGAGCTTGTTGAGCTCACTCCTTTAAGTGGAGCTTTAGTTGGTCTACCTGGGGTTGATGGATTGTCCACAGAGCAAAGAAAAAGGCTGACCATTGCTGTTGAGCTTGTTGCCAACCCTTCTATTGTGTTCATGGATGAACCCACTTCAGGACTGGATGCCAGGTCTGCTGCCATTGTTATGAGAACTGTGAGGAATATCGTCAACACTGGGCGGACTATTGTTTGCACAATCCATCAGCCAAGCATAGATATCTTTGAGTCTTTTGATGAGCTTTTATTTATGAAGAAAGGAGGGAAGCTCATTTATGCTGGTCCTCTAGGCGCCAAGTCTCACAAACTTGTTGAGTTTTTTGAGGCCATTGAAGGAGTCCCGAAGATCATGCCTGGCTACAACCCTGCTACATGGATGCTTGAGGTCACTACTTCTACAGAAGAAGCTCGTCTTGGTCTGGATTTTGCAGAAGTTTATAAAAGATCAAATCTATTCCAGCAAAATAAAACACTGGTTGAAAGACTAAGCATACCAAACTGGGATTCAAAGGATTTAAGCTTCCCAACCAAATATTCTCAGTCATTCTTTTCCCAGCTTCTGGACTGTCTTTGGAAGCAAAATCTGTCTTATTGGCGGAATCCACAATACACTGCTGTCCGCTTCTTCTACACTGTTATCATATCATTGATGTTTGGAACGATATGCTGGAAATTCGGTTCTAAAAGGGAGACACAGCAGGACATTTTTAATGCTATGGGATCCATGTATGCAGCAGTCTTATTTATAGGAATCACAAATGCCACTGCAGTGCAGCCTGTTGTTTATGTTGAAAGGTCTGTTTCATGCAGAGAAAGAGCAGCAGGGATGTATTCTGCTCTGCCATTTGCCTTTGCCCAGGTTTTGGTTGAATTGCCTTATGTGTTTGTACAGTCACTTATCTACAGCAGTATGTTCTACTCCATGGCCTCATTTGAATGGAACCTGACGAAGTTCCTTTGGTACTCATGCTTTATGTATTTCACTTTACTGTACTTCACCTTCTTTGGAATGATGACCATTGCTGTTACACCCAATCATAATGTTGCTGCAATCATCGCTGCTCCGTTTTATATGATGTGGAACCTTTTCAGTGGATTCATGATTGTTCGCAGGAGAATCCCCATATGGTGGAGATGGTATTATTGGGCAAATCCAATAGCCTGGACTTTGTATGGGCTTCTGACGTCCCAATATGGAGACATGAAAAACCAAGTGAAGCTCTCAGATGGGGTGCGGTCCGTGTCAATAAAACAGTTACTTGAGGATGAGTTTGGTTACAAACATGATTTCTTGGAGAAAGCTGGTTTGGTGGTGGTTTGTTTTTGCATAGTCTTTGCAGTCACTTTTGCTTTTGCAATCAAATCCTTCAACTTCCAAAGGAGATAG 4281 42.89 MNSFSSLDTVYASPNSGNGDCDDKALRWASLQRIPTYSRARRSLFRNISGELSEVELCKLDVYERRLVVDRLVRAVTEDPELFFDKIRRRFKDVGLEFPKVEVRFEHLKVNSFVHVGSRALPTIPNFIFNTTEAFLRQLRIFPGERKKLSILDDISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTGLQMSGRITYNGHELREFVPQRTSAYVSQQDWHVAEMTVKETLQFSRRCQGVGFKYDMLLELLRREENAGIKPDEDLDIFIKALALGEQKTSLVTEYIMKILGLDPCADTLVGDEMLKGISGGEKKRLSTGEMLVGASTVLFMDEISTGLDSSTTHQIIKYLRHSTQALNGTTVISLLQPDPETYELFDDIILLAEGQIVYQGPSKAALEFFELMGFQCPDRKNVADFLQEVISEKDQEQYWSFPDRHYQYVPVAKLAEAFRSFHARKSLFQLLAVPIDGCCSHPAALSTFTYGVKRAELLKMNQILEAHPNSIKQILNTDTRAMGSILQLLFVVVIMVTVFFRTTMHHNTLDDGGVYLGALYFAIVMILFNGFTEVPMLVAKLPVLYKHRDLRFYPCWVYTIPSWFLSIPSSILESCIWVAVTYYVVGFDPQITRCLKQALLYFSLHQMSISLFRIMASLGRNMIVANTFGSFAMLVVMALGGFILSRDSIPNWWIWGYWFSPLMYAQNAASVNEFLGHSWDKRAGNHTTFSLGEALLRGRSLFPESYWYWIGVGALLGYAILFNILFTLFLTYLNPLGRRQVVVSKEKPLNEEKTNGKHAVIELGEFLKHSHSFTGRDIKERRGMVLPFQPLSMSFHDINYYVDVPAELKQQGALEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSIRISGYPKRQETFARISGYCEQSDVHSPFLTVHESLLFSACLRLPSHVDLKTQKAFVSEVMELVELTPLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKKGGKLIYAGPLGAKSHKLVEFFEAIEGVPKIMPGYNPATWMLEVTTSTEEARLGLDFAEVYKRSNLFQQNKTLVERLSIPNWDSKDLSFPTKYSQSFFSQLLDCLWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWKFGSKRETQQDIFNAMGSMYAAVLFIGITNATAVQPVVYVERSVSCRERAAGMYSALPFAFAQVLVELPYVFVQSLIYSSMFYSMASFEWNLTKFLWYSCFMYFTLLYFTFFGMMTIAVTPNHNVAAIIAAPFYMMWNLFSGFMIVRRRIPIWWRWYYWANPIAWTLYGLLTSQYGDMKNQVKLSDGVRSVSIKQLLEDEFGYKHDFLEKAGLVVVCFCIVFAVTFAFAIKSFNFQRR* 1427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3596650 3605452 - Vvi4g365 Vvi4g365 785144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g365 1426 SMART AAA_5 161 393 IPR003593 -
Vvi4g365 1426 SMART AAA_5 861 1053 IPR003593 -
Vvi4g365 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 824 1076 IPR003439 GO:0005524
Vvi4g365 1426 PANTHER ATP-BINDING CASSETTE TRANSPORTER 18 1426 - -
Vvi4g365 1426 PANTHER ABC TRANSPORTER G FAMILY MEMBER 32 18 1426 - -
Vvi4g365 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 1060 IPR027417 -
Vvi4g365 1426 Gene3D - 841 1071 IPR027417 -
Vvi4g365 1426 Pfam Plant PDR ABC transporter associated 710 774 IPR013581 -
Vvi4g365 1426 Pfam ABC-2 type transporter 367 422 IPR043926 GO:0140359
Vvi4g365 1426 CDD ABCG_PDR_domain2 821 1059 IPR034003 -
Vvi4g365 1426 Pfam ABC transporter 853 1004 IPR003439 GO:0005524
Vvi4g365 1426 Pfam ABC transporter 152 334 IPR003439 GO:0005524
Vvi4g365 1426 Pfam ABC-transporter N-terminal 78 127 IPR029481 -
Vvi4g365 1426 Pfam ABC-2 type transporter 1150 1362 IPR013525 GO:0016020|GO:0140359
Vvi4g365 1426 Pfam ABC-2 type transporter 502 705 IPR013525 GO:0016020|GO:0140359
Vvi4g365 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 136 409 IPR003439 GO:0005524
Vvi4g365 1426 Gene3D - 137 438 IPR027417 -
Vvi4g365 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 409 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g365 K08711 PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR - vvi:100255917 2757.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g365 Vvi11g401 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g365 . . . . . . . Bma01g02161 . . . Cma05g00437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36