Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g366 ATGAAAATAGCTGCGGCAGCGAATTCTGTTGAATCTTCGCCGACTGTGCCGGAAAAGCCTGAAATCGAGCTCGAATTCATAGGGGAGAAGCCAGGTAGCGATGGGTCATTCCCAGTGGAGAGGGCGAAGGCAGTGAGTGGAGAGAAGCTTCTGAGGAACATCATGTTGGATAACAAGATAGAGCTCTACGCCCCGTACGGGAAGTTGATGAACTGCGGGGGCGGTGGAAGCTGCGGAACTTGCATTGTTGAGATTATTGATGGAAAAGATCTTCTGAACGAGAGAACAAACACAGAGCTCCGTTATCTGAAGAAGAAACCTGAATCTTGGAGGCTTGCTTGCCAAACTATTGTTGGAAATAAAGAGAACTCTGGCAAGGTTGTAGTTCAGAGACTGCCCCAGTGGAAGAAGTGA 414 48.55 MKIAAAANSVESSPTVPEKPEIELEFIGEKPGSDGSFPVERAKAVSGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWKK* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3609186 3613291 + Vvi4g366 Vvi4g366 785145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g366 137 Pfam 2Fe-2S iron-sulfur cluster binding domain 67 118 IPR001041 GO:0051536
Vvi4g366 137 SUPERFAMILY 2Fe-2S ferredoxin-like 42 120 IPR036010 GO:0051536
Vvi4g366 137 Gene3D - 36 136 IPR012675 -
Vvi4g366 137 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g366 137 PANTHER FERREDOXIN/ADRENODOXIN 8 136 IPR001055 GO:0051537|GO:0140647
Vvi4g366 137 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC 8 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g366 - - - vvi:100250753 280.026
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009892 1 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 2 1 33