Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g37 ATGGCGATCGCCGCAGAGACTCAACCTCAGGAGAAGGCTTCTTCAGATGTTCCAGCAGTGGAGAAAAAAAGGTGGACCCTAAATGACTTTGACATTGGAAAGCCCCTGGGGCGAGGAAAGTTCGGTCATGTCTATTTGGCGAGGGAAAAGAGAAGCAATCATATTGTGGCCCTAAAAGTGCTCTTCAAGAGCCAACTGCAACAGTCTCAGGTTGAGCATCAGCTTCGCCGGGAAGTTGAAATACAAAGTCATCTTCGACACCCCAATATCTTGCGCCTTTATGGGTACTTTTATGATCAGAAACGAGTGTATTTGATATTAGAATATGCGGCCAAAGGTGAACTCTACAAGGAACTACAGAAGTGTAAATACTTCAGTGAAAGGCGTGCTGCTACTTACGTTGCTTCATTAGCTCGGGCTCTCATATATTGCCATGGGAAGCATGTAATACACAGAGACATCAAACCTGAGAACCTGTTAGTTGGGGCACAGGGTGAACTTAAGATTGCAGATTTTGGATGGTCAGTGCACACATTTAACCGCAGAAGGACCATGTGTGGCACACTGGACTACCTTCCACCTGAGATGGTGGAGAGTGTGGAGCATGATGCTAGTGTGGACATATGGAGCCTTGGTGTACTTTGCTATGAGTTTCTTTATGGGGTTCCTCCTTTTGAGGCTAAGGAACACTCAGACACCTACAGAAGGATTGTGCAAGTTGATTTAAAGTTCCCCCCAAAACCAATAGTCTCTTCTACAGCGAAGGACCTCATCAGTCAGATGCTGGTGAAGGATTCTTCGCAGCGGCTCCCACTACACAAGCTCCTTGAGCATCCCTGGATCGTTCAGAATGCAGATCCCTCTGGTGTCTATAGGGCTTGA 882 46.83 MAIAAETQPQEKASSDVPAVEKKRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPKPIVSSTAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNADPSGVYRA* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 466491 470163 - Vvi4g37 Vvi4g37 784816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g37 293 CDD STKc_Aurora 29 282 - -
Vvi4g37 293 ProSiteProfiles Protein kinase domain profile. 30 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g37 293 SMART serkin_6 30 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g37 293 Gene3D Transferase(Phosphotransferase) domain 1 114 289 - -
Vvi4g37 293 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 8 292 IPR030616 GO:0004672
Vvi4g37 293 SUPERFAMILY Protein kinase-like (PK-like) 16 286 IPR011009 -
Vvi4g37 293 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Vvi4g37 293 PIRSF ILK 3 278 - -
Vvi4g37 293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vvi4g37 293 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 8 292 - -
Vvi4g37 293 Pfam Protein kinase domain 32 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g37 293 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g37 K08850 AURKX; aurora kinase, other [EC:2.7.11.1] - vvi:100268070 597.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g37 . Blo12g01056 . . . . . . . . Cma01g01444 . Car09g00552 . . . Cpe06g00481 . . . . . . . . . . . . . . . . . Cone20ag0325 Lsi04g02318 Csa03g04537 Chy04g00166 . . . . Bda13g01320 . . . Bma02g00077 . Cmo01g01498 . Cma09g00623 . . . . Cpe02g00504 Bhi09g02557 . . . . Mch11g0757 . . . . . . . . . . . Cme04g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76623 PF00069 Pkinase 1.30E-73 CL0016 Vvi PK