Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g371 ATGGAGCAACCAGGAAATCAAATTGATACTGAGCACATCATTGACATAACAAGGAGTGGTGATGCTTCCTCATCTAATTCATCCAATGATGGACCTTCAACTAGCTTGGACCAGTTGCAGCATGACGATAGACCCGCAAGTAGTGCGAGGGTCCCTATTTCTCAACCTTCATTTTCTTCCTCCAATGTATCAAACTCCAGAAATTCCTTCAGAAGAAGAGCAGATGCCCGCCGTCGTAGGAGTCCATTGAATTCTGGGTTATGGATTTCTATCGAACTAGCTCTGACTGTGAGTCAGATTATTGCATCTGTTGTTGTTTTATCTTTGTCACGGCATGAGCACCCACATGCTCCATTGTTTACATGGATTGTGGGATATGCATCTGGATGTGTTGCAACCCTCCCTATTCTCTATTGGCGTTTTCGTCATCGCAACCAGGGTCATGAGCAAGAGTCAGCTCAATCGCGGCAGGTTTCTTTTCACAGCAACCTCCCTGGAGGACCTACCTTTTCCCTTTCAGTTACTGGCACCTCAGAAGAAGAAGATCGCCAACCCTCTGTTCCAGCCACGAGAAACAGTCAAAGTGTAAGGAGATTAAGTGCAAGACTAAAGGTTCTGGTGGAATACTTCAAGATGGCTCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTAGGAAACGTGTGGATCTTTGGAGGGCACTCCTCATCCTCTGAGGCTCCCAACTTGTACAGGTTATGTATAGTCTTTCTTACCTTTAGCTGTATCGGATATGCCATGCCGTTCATTCTATGTGCTACAATCTGCTGCTGCCTCCCTTGTATAATTTCCATCCTTGGCTTTAGAGAGGATCTGACACAGACTAGAGGAGCCACATCAGAATCAATAAATGCTCTTCCAACCTACAAGTTCAAGCTGAAAAAAAATAGAAATGGCGATGATAGAGAAGGCAATTCAGGTGCGGGCGAAGGTGGGGTTGTAGCAGCTGGAACAGAAAGGGAGCGGGTGATCTCTGGAGAAGATGCAGTATGCTGTATTTGCTTGGCAAAGTATGCAAACAACGACGAGCTTCGGGAGCTGCCATGTTCTCACTTCTTCCACAAGGAGTGTGTGGATAAATGGCTGAAGATCAATGCTCTATGTCCCCTCTGCAAGCGTGAGGTCGGTGAGAGCTTTTTAGGTTCACTCTCAGGGTTAAGTATCAACTAG 1206 46.02 MEQPGNQIDTEHIIDITRSGDASSSNSSNDGPSTSLDQLQHDDRPASSARVPISQPSFSSSNVSNSRNSFRRRADARRRRSPLNSGLWISIELALTVSQIIASVVVLSLSRHEHPHAPLFTWIVGYASGCVATLPILYWRFRHRNQGHEQESAQSRQVSFHSNLPGGPTFSLSVTGTSEEEDRQPSVPATRNSQSVRRLSARLKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSSSEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKNRNGDDREGNSGAGEGGVVAAGTERERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKREVGESFLGSLSGLSIN* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3662643 3669042 + Vvi4g371 Vvi4g371 785150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g371 401 SUPERFAMILY RING/U-box 334 389 - -
Vvi4g371 401 SMART ring_2 343 383 IPR001841 -
Vvi4g371 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 390 IPR013083 -
Vvi4g371 401 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 391 - -
Vvi4g371 401 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 391 - -
Vvi4g371 401 MobiDBLite consensus disorder prediction 1 42 - -
Vvi4g371 401 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Vvi4g371 401 MobiDBLite consensus disorder prediction 50 69 - -
Vvi4g371 401 Pfam Ring finger domain 343 384 IPR001841 -
Vvi4g371 401 MobiDBLite consensus disorder prediction 1 77 - -
Vvi4g371 401 SMART ringv_2 342 384 IPR011016 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g371 Vvi9g413 ECH
Vvi4g371 Vvi11g392 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g371 - - vvi:100245718 729.939