Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g372 ATGGAATTGGAGTGGAAAGGTTTATATTGCCATCGTCCGATTCCAGACTCAGACTCCAACCCTAATCTCAGACACAGCCGACTCGCTTCTTCTTCATTTTTCCCTGCATTCTCCGCCTCTGTCTTCCACCGCCTCCGATCAGTGATGATTGAACATACTACTGCCTATCAGTTATCACTACCAAACCAGCAAATGGCACAGCTGGAACCCACTTCCAACAACTTGGACTCGTCAATGCCCAACATGCAAATGGGACAAATCAGAACCTTGCCCAATGACCATGGATTACAGCATCTATCAGTATCAAGCAAGCAAATGGAACTGTTGGAGCCTATATCTTGTACTCATATGCCTCCAATGATACCTGTATCAAGTAAGCAACTGGGGCAGATGGAACCAAGGGCTAATAATCTGGTGGCACAACAGTCTTTAATGCCAAACAGGCAACTGGAAGTGGTGGATTCAAATTCGAATAATTTTGGATTACAGCAGTCTTCAACACCTAATAAACGGAAGGTACCAATGGAACCTATATCTAATAGTCCTGGAGCACAGCAGATATCAATGCCTAACAAGCGGGTGGCACAAATGGAGCATAGACCATGGTTACAGCAATTATTTGTTCCCAATAAAAAAATACCAGTGCAGGTTGCACCCAACACTCCAGGTTCACAGCATTTAACAGTACCGAATAAGAAAATGGTGCGTACAGATTCCATGTCTCGTAAATCTGCCCCTCAGCAAGTAGTAACTCCAAAAGGTCAAACCACCCAGATGCAACCATCTCCCAAGGTTCGATCGGAGTCATTTGAATCTGTGAGGACTAAGCTGAGGGAATCATTAGCTGATGCATTGGCCTTGGTTTACCAGCAGCAAGATAAACCTCCACATATGGAAAAGAATTCTAAAAATGAGGCTACAAATACGAGCATTCCAAGGCAGTCACAGGAGGACTCTGAGCCTGCTGAATCTGCTTCTACTGCTAACTGGAAGTATGACAGGCAAGAATTCCAATTGAATACTGTGTTGCCTGATGCGGAAAGTTCTTTTAGTGACAACTTCTTTGTCAAAGATGAGCTTCTGCAGGGAAATGGGCTCTCTTGGGCACTGGATCTAGACACGGAGGTTGTAAATGAGGGGCAAAAAACAGTTCAATCTCCACAAACTTTGGCATTTGAAATTGAAGCAGAACTCTTTAAATTATTTGGAGGTGTGAATAAGAAATATAAAGAAAAGGGTAGGTCTCTTTTGTTCAATCTAAAAGATCGTAATAATCCAGAACTGAGAGAAAGAGTTGTGGCTGGTGAAATTTCCCCAGAACGGTTATGTTCTATGACTGCAGAGGAACTTGCTTCGAAAGAGCTGTCTGAGTGGCGAATAGCAAAAGCAGAAGAGCTTGCCCAAATGGTAGTTTTGCCTGATTCAGAAGTAGATATCAGGCGATTAGTGAGGAAAACACATAAGGGTGAGTTCCAAGTAGAGTTTGAGCAGGATGATGGTGCCTCAGTGGAGGTTTCTGTTGGAACAAGTTCACTTACTCGAGTCAGACCAAGAACCAAAGAGAAGGAAGCTCGTCGTCCCTCTGAACCTGATGGAACCAAAAGCAAAACAAATCTTATAGAGGAAAAAGACCCTGATTTGATGCAAGGGCTGATGGGGGATGAATTTAAGGATGAAGAATTTCTTCCTCCAATTGTCTCTCTGGATGAATTCATGCAGTCTCTTGACTCTGAGCCACCATTTGAAAATTTACCGGTGGATGCTGAGAAAGTGACACCTGCCTCGGGCAAGGACAACTCAGGGGTTAATGTATCTCCAAAGGGCCCTGATAGTACACTAAACAAGCCTGATAAAATGCATGAAAAAGATGCAAAATCTGATGCTAATGAGAAACCTAATGATGGTCACGTACAATCAGAAACCTCCCTGCCAGGTGGTACATCTAAGAGTAATGAGAAATCAAGTCACGTTCATATGCAATCAGAAAGTGCCCCTCATGTTGACCAAAAGAAGGGTGATTATGTCTGGGAAGGCTTACTTCAGTTGAATGTCTCATCCATGGCCACAGTTGTTTGTTTCTTTAAAAGTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATGTCTCGAAGTCGTGCCACCATGGTTGTCCGTTTTGCTTGGAAGGAGGGATCCTCAGAGGATGGGCGTGCAAACCTTTGCGAGGTGGCTGATTCATATGTTTTGGATGAGAGAGTGGGGTTTGCTGAGCCAGCACCTGGCATGGAACTCTACTTTTGCCCACCTCACACAAGAACTCTGGAAATGATCAGCAAACACCTTTACAAGGACCAGACTGAGACACTTAATTCTACTGATAATGGCCTAATTGGTGTTGTTGTATGGAGAAAAGCTCAATTAACTTCAACAATATCACCAAACTCATCTTCACTGCATAAACACGGCACAAAGAAACAACACTTTTCAACTAGGAGACACCATGAAAAAGATGCTAATATGAACTCCAATTTCACATCCAAGCCCTCACACCCTCTGGGCTCTGCTCCCAACATACCTGAACCCTCAACCGATGATGATGATGACATTCCTCCTGGGTTTGGCCCTGCGGCTTCCCGGGATGAAGATGACCTGCCTGAATTCCAATTTTCGGGTGGCTCAAACTCATCAACTGCGCCTTTCTCTGCCCGAACCACCCCTGGGGGCCCAGGAGTGGCCCCCTTTAATCAGCCTCCCCATAACTCACCCCGCCCTGTAGAACAGATGAGACAGCTGATCCAAAAATATGGGCAAAGCAGAATAATAGGGCATGTGACTCAGCCATGGGCTGATGATGACGACGATGATATACCAGAATGGCAGCCACAAGCCCCCCAACAGCAGCTCCAGCCCCCACAACCAACACCTCCAGTTTATGGTTTTCAGGCGCAGCCGGTGCTGCCCACCCATATGCAACAGCATTTGGGAGCAGCACAGCCCCAGCAGCCACTGGGACCATTACCAACCCCTCTGTCAATGACTCTGCAGTCCCTGCAATCATCAGTGAATCTGGTACAAGCCCCACAAAACCCTCCTACCCCTTCATGGCAGCAGCAGCAGCAGCAGGGTTCTTGGTGGGTTCCCCCATCTGGTCCCCAAGGCCTTCCCTCTGTCCAGGGAAATGCTCCTTATCCCGGTACTGGGCAGACCGGGATAAACTGGAGGCAGGATGTACCTAGAAGCAGAGGGTTTTAA 3294 46.05 MELEWKGLYCHRPIPDSDSNPNLRHSRLASSSFFPAFSASVFHRLRSVMIEHTTAYQLSLPNQQMAQLEPTSNNLDSSMPNMQMGQIRTLPNDHGLQHLSVSSKQMELLEPISCTHMPPMIPVSSKQLGQMEPRANNLVAQQSLMPNRQLEVVDSNSNNFGLQQSSTPNKRKVPMEPISNSPGAQQISMPNKRVAQMEHRPWLQQLFVPNKKIPVQVAPNTPGSQHLTVPNKKMVRTDSMSRKSAPQQVVTPKGQTTQMQPSPKVRSESFESVRTKLRESLADALALVYQQQDKPPHMEKNSKNEATNTSIPRQSQEDSEPAESASTANWKYDRQEFQLNTVLPDAESSFSDNFFVKDELLQGNGLSWALDLDTEVVNEGQKTVQSPQTLAFEIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVVAGEISPERLCSMTAEELASKELSEWRIAKAEELAQMVVLPDSEVDIRRLVRKTHKGEFQVEFEQDDGASVEVSVGTSSLTRVRPRTKEKEARRPSEPDGTKSKTNLIEEKDPDLMQGLMGDEFKDEEFLPPIVSLDEFMQSLDSEPPFENLPVDAEKVTPASGKDNSGVNVSPKGPDSTLNKPDKMHEKDAKSDANEKPNDGHVQSETSLPGGTSKSNEKSSHVHMQSESAPHVDQKKGDYVWEGLLQLNVSSMATVVCFFKSGEKASTKEWPGFLEIKGRVRLDAFEKFLQELPMSRSRATMVVRFAWKEGSSEDGRANLCEVADSYVLDERVGFAEPAPGMELYFCPPHTRTLEMISKHLYKDQTETLNSTDNGLIGVVVWRKAQLTSTISPNSSSLHKHGTKKQHFSTRRHHEKDANMNSNFTSKPSHPLGSAPNIPEPSTDDDDDIPPGFGPAASRDEDDLPEFQFSGGSNSSTAPFSARTTPGGPGVAPFNQPPHNSPRPVEQMRQLIQKYGQSRIIGHVTQPWADDDDDDIPEWQPQAPQQQLQPPQPTPPVYGFQAQPVLPTHMQQHLGAAQPQQPLGPLPTPLSMTLQSLQSSVNLVQAPQNPPTPSWQQQQQQGSWWVPPSGPQGLPSVQGNAPYPGTGQTGINWRQDVPRSRGF* 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3669068 3680305 + Vvi4g372 Vvi4g372 785151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g372 1097 Pfam Transcription factor S-II (TFIIS), central domain 379 466 IPR003618 GO:0006351
Vvi4g372 1097 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 328 1069 - -
Vvi4g372 1097 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 81 327 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 596 610 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 902 917 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 162 187 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 978 994 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 613 634 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 218 268 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 291 329 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 590 668 - -
Vvi4g372 1097 SMART mid_6 359 461 IPR003618 GO:0006351
Vvi4g372 1097 Gene3D - 366 453 IPR036575 GO:0006351
Vvi4g372 1097 MobiDBLite consensus disorder prediction 1038 1097 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 302 329 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 960 1025 - -
Vvi4g372 1097 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 328 1069 - -
Vvi4g372 1097 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 81 327 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 506 546 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 825 940 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 1038 1089 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 218 274 - -
Vvi4g372 1097 ProSiteProfiles TFIIS central domain profile. 273 478 IPR003618 GO:0006351
Vvi4g372 1097 SUPERFAMILY Elongation factor TFIIS domain 2 272 454 IPR036575 GO:0006351
Vvi4g372 1097 Pfam SPOC domain 669 816 IPR012921 -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 635 662 - -
Vvi4g372 1097 MobiDBLite consensus disorder prediction 515 546 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g372 - - - vvi:100267937 1973.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42