Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g373 ATGGGGGTGGATTATTACAACGTATTGAAGGTAGGAAAGAATGCAACGGATGAAGATCTCAAGAAGTCATACAGAAGGTTGGCTATGAAATGGCATCCTGATAAGAATCCCAATAACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAAGGGTTGAAAGACATGCCACCTCCTGGCAGTGGTGGTGGATTCCCCTTTGGGAGTGGGGATGCAAACGGGTTTTTTCCTCGGAATGCTGAGGACATTTTTGCTGAATTCTTTGGGAGTAATCCTTTCGGATTTGGATCAGCAGCACATGGAAGGTCCATGAGATTCCAGTCAGAAGGAGGAGGCACTTTTGGGGGATTTGGTGGTGGTGAAAGTGCTTTCCGTTCGTATACTGAGGGCACCGGTGGTAGTGTCAGGCTTAGGAAACCGCCACCAGTGGAGAACAAATTGCCATGCACCCTTGCAGAGCTGTACACAGGATCAACAAGGAAAATGAAGATATCCAGGACTGTTGTCGATGCTAATGGTCGGTTAGTGCCAGAAACAGAAATATTGATCATTGAAGTGAAGCCCGGGTGGAAGAAAGGAACAAAAGTCACTTTTCAAGATAAAGGGAATGAACAGCTGAACCAGCTAGCAGCAGACCTTGTATTTGTGATTGATGAAAAGCCTGATAATGTTTTCAAGAGAGACGGCAACGACCTAGTCATGAACTATAAGGTATCACTAGCAGAGGCACTTGCAGGGACTGCAGTAACCCTCACTACACTGGATGGCCGTAATCTAACAATCCCAGTTACAGATATTGTGTCTCCTGGTTATGAACTTGTTGTTGCTAAGGAGGGAATGCCAATTGTGAAGGAACCAGGTAACAGGGGTGATCTGAGGATCAAATTCGAAGTGAAGTTCCCGACAAGATTGACTCCTGAGCAACGTGCAGGACTCCGACGTGCCTTGGGAGGTTGA 1020 46.27 MGVDYYNVLKVGKNATDEDLKKSYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKVVYDQHGEEGLKDMPPPGSGGGFPFGSGDANGFFPRNAEDIFAEFFGSNPFGFGSAAHGRSMRFQSEGGGTFGGFGGGESAFRSYTEGTGGSVRLRKPPPVENKLPCTLAELYTGSTRKMKISRTVVDANGRLVPETEILIIEVKPGWKKGTKVTFQDKGNEQLNQLAADLVFVIDEKPDNVFKRDGNDLVMNYKVSLAEALAGTAVTLTTLDGRNLTIPVTDIVSPGYELVVAKEGMPIVKEPGNRGDLRIKFEVKFPTRLTPEQRAGLRRALGG* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3680722 3684714 - Vvi4g373 Vvi4g373 785152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g373 339 CDD DnaJ_C 162 325 - -
Vvi4g373 339 Gene3D - 163 241 - -
Vvi4g373 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 339 - -
Vvi4g373 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vvi4g373 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vvi4g373 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vvi4g373 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vvi4g373 339 CDD DnaJ 4 59 IPR001623 -
Vvi4g373 339 Gene3D - 242 338 - -
Vvi4g373 339 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 339 - -
Vvi4g373 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vvi4g373 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 242 IPR008971 GO:0006457|GO:0051082
Vvi4g373 339 SUPERFAMILY Chaperone J-domain 3 98 IPR036869 -
Vvi4g373 339 Pfam DnaJ domain 4 67 IPR001623 -
Vvi4g373 339 SMART dnaj_3 3 62 IPR001623 -
Vvi4g373 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 331 IPR008971 GO:0006457|GO:0051082
Vvi4g373 339 Pfam DnaJ C terminal domain 165 322 IPR002939 -
Vvi4g373 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vvi4g373 339 Gene3D DnaJ domain 3 121 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g373 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - vvi:100268033 626.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g373 Blo01g01363 . Bda01g00723 . . . . Bma01g02150 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1734 . . . . Chy04g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007809 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36