Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g377 ATGCCTGTGAAACTGCAGCAATCATCATTTCGAGATCGGACGCCAGAGTTTCTTAATGTGGCGGAGAGGCTGAAGAAGTCATTCTCGTCAACTCAGAATGGGGCAAATAGTGCTTCAAAAGCAGAGGAACAGCGCTTTGCAGTTGCAATGCAGTCAGAGTTTAACAAAAGAGCTTCAAAGATTGGGTTTGGAATACATCAAACATCGCAGAAGCTTTCAAAGCTTGCAAAATTGGCTAAAAGGACTTCAGTTTTTGATGATCCCACCATGGAAATCCAAGAGCTGACTGCAGTTATAAAGCAGGATATTACTGCTCTGAACTCAGCAGTAGTAGATCTTCAGCTTCTCAGCAACTCCAGAAATGAAAGTGGGAATATCTCCAGTGACACCACCAGTCATTCGACCACAGTTGTTGATGACCTGAAAAACCGCTTGATGAGCGCCACAAAGGAGTTCAAAGAAGTTCTCACTATGCGAACAGAGAACTTGAAGGTTCATGAGAACAGAAGACAGTTGTTTTCCACTGCTTCAAAAGATTCTACAAATCCTTTTGTTCGTCAACGTCCATTGGCTACCAGGTCTGCTGCTAGTGCCTCAGCAAGCCCTCCTCCATGGGCTAATGGATCCCCATCTTCATCCCAGTTATTTCCCAGGAAGCAGATTGATGGAGAGAGTCAGCCACTGATACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGTTGGTTCCATTACAAGACAGTTACATGCAGAGCAGAGCGGAAGCTCTTCAAAATGTGGAGTCTACAATTCATGAGTTGAGCAGCATCTTCAACCAGCTGGCAACACTGGTTTCTCAGCAAGGCGAACTTGCTATCAGAATCGATGAGAACATGGATGACACGCTGGCGAACGTGGAAGGGGCGCAAGGGGCTTTGCTCAAGTATCTCCACAGCATATCATCTAATAGGTGGTTGATGATCAAAATATTCTTTGTATTGATTTTTTTCCTCATGGTTTTCCTATTTTTTGTGGCATAA 1023 44.77 MPVKLQQSSFRDRTPEFLNVAERLKKSFSSTQNGANSASKAEEQRFAVAMQSEFNKRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLSNSRNESGNISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSTASKDSTNPFVRQRPLATRSAASASASPPPWANGSPSSSQLFPRKQIDGESQPLIQQQQQQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGELAIRIDENMDDTLANVEGAQGALLKYLHSISSNRWLMIKIFFVLIFFLMVFLFFVA* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3752654 3757587 - Vvi4g377 Vvi4g377 785156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g377 340 ProSitePatterns Syntaxin / epimorphin family signature. 254 293 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi4g377 340 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Vvi4g377 340 SUPERFAMILY t-snare proteins 51 303 IPR010989 GO:0016020|GO:0016192
Vvi4g377 340 Pfam SNARE domain 285 336 IPR000727 -
Vvi4g377 340 PANTHER SYNTAXIN 2 339 IPR045242 -
Vvi4g377 340 CDD SNARE_syntaxin5 251 329 - -
Vvi4g377 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 310 IPR000727 -
Vvi4g377 340 Gene3D - 48 303 - -
Vvi4g377 340 SMART tSNARE_6 243 310 IPR000727 -
Vvi4g377 340 PANTHER SYNTAXIN-32-LIKE 2 339 - -
Vvi4g377 340 MobiDBLite consensus disorder prediction 225 244 - -
Vvi4g377 340 MobiDBLite consensus disorder prediction 190 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g377 Vvi11g384 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g377 K08490 - vvi:100257761 560.066