Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g379 ATGGAACATAGCGTAGAAAACTCAGGTGGTAGTGAAATTTCGAAGAAATCGAGATCTTTAGATCTTCAGAGCATATATAGATCTAAGGTTTCACAAGAGGGTGATAATAAGATCTTGAAGCGAAAACATAGTTCAGAAAATGATGGGGAGGTTGAGTCGGGACAGGGGAAGAAGAAAAGTAACAGTAGAAAAGCCGTATCTCTGAGTAGTCTGAAATCCCTTCTTAAAAACAGTCACAAGAGTTTAGATGAAGTGTACGCTGATGGGTTGGGATCGGGCTCAAGTTCAGGTTTGCCTGATTCAAAGAAGAAAGAATTGGGGCTGAGTCAGAAATTGGATGACAATAGTGGGTTAAATAGCATTTCGCGTAATTTGGATAATAATGTTATTCGAATTCCAAAACGCCCACGTGGCTTTGTACGGCGGAGGAGATTTGATGGTAATCACATGTTGCAGCCAGGGAGGTCATCACCAGCTAGTAGTAAAGATGTGTTTGTTGATCAGATAACTAAGTTAAGTGATGATTCGGCCACTCGGGTTGTCCCTTTGAAAATTAAGCGCAAAAAGGGTTTTGATGATTTTAAGGAAAATAGGTCTAGTGGGTCTAGTTCAGCTCCACACTACAAGGAGGGTGATGAGATCAAGGTTGTAGACAATGGCAATTCATCTTTGAGAAAGAGAATGCCACGGAAGAAGCAGGTGAAAAGGAAGAATTTGTCATCAGAAGGTAAAAGTATTGTGAAGGAGGAGGCGGTGCCTTTAGCTGATAATCCTATTAAAAATTGTGATGAAGAGGATGAGGAGAATCTTGAAGAGAATGCAGCAAGGATGCTTTCATCTCGGTTTGATCCAAACTGTACTGGGTTTTCGTCAAATGGCAAAGCTTCAACACCTCAATCAACAAATGGGCTGTCCTTTTTGTTATCTCCTGATCAGGATTGTATGATTCACAGGATGAATTCTCTTGTTGGTTCTGAATCTGCATCTGTTGATACTGCTGGCAGAGTATTACGACCACGAAAACAGCACAAGCAGAAGGGTCTCTCAAGGAAAAGGCGTCATTTCTATGAAATTTTCTCCAGGAACTTGGATGCCTACTGGGTATTGAACCGAAGGATCAAAGTCTTTTGGCCATTGGACCAGAGTTGGTATTTTGGTCTTGTGAAAGACTATGACCCAGAAAGAAAGCTTCATCATGTGAAGTATGATGACCGAGATGAAGAATGGATTGACCTGCGACATGAGAGATTCAAGCTCTTGCTACTTCCTAGTGAGGTTCCTGGTAAGGCTGACAGGAAAAAAATGGAAATGGGAGATAAATGTCCTGATGATGAAAATGAAGAAAGAAAGCACAGAAAAAGAGGAGGAAAGAGAGACTTGCCTATGGAGGATGATAGCTGCATAGGCGGATACATGGACTCAGAACCCATCATCTCATGGTTGGCTCGATCTTCCCGTCGGATCAAGTCTTCCCCTTTTCACGTTATGAAGAAACAGAAAACGTCTTACCCATCTTCAAATGCCGTGCCATCACTGTTATCTGATAATACTGACAGCAATGCACAGGGGTGCCTTGATGGCAGCTCCCTGAAAAGGGATAAAGATAGATTAAATAATTCTGCAATGCCTGATGAATTTACTGATGCTGAAAAAATTGAGAAGTCTGTTCCTGGAAGCACCATTTGCTACAAAGATGAAAAAGTTCCAATTGTTTATTTCAGGAGGCGATTGAAGAGGTTCCAGGGACTGCATTATGTTTCTGAGGTTCACAATGTATGCGGAAGTGCATCTGAGCTGGTTCCTTCACCTGTTCCTGTAATTGATAGGTTGGGGACTTTGGAAGAATTCCTTCTTTCCTTGAGACAGTCTGATCAATTTGCGTTATTGTGGTCCAGTGATGGTGCTGGGTTACTAAAATTATCTATCCCAATGATAAATTCTAGGCATTTCAGATTTGAATTCAGTCTCCCTGCACTTCCAGTTCTCAATTGTGCATTTGGAGCAGAGAACTTTTGGTTGTTTCACACTGTGTTGTTACATCAGTATGGTGTGGTGATGCCTAAGTGGCCAAAGGTTCGTTTGGAGATGCTTTTTGTTGATAATCTTGTTGGGTTGAGGTTTCTCTTGTTTGAAGGTTGCTTGAAGCAGGCTGTGGCCTTTGTTTGTCTGGTCCTGACAATATTCAATCAACCTAATGAACAGGGGAGGTATGTTGACCTGCAATTTCCAGTAACTTCAATCAAGTTCAAGTTGTCTTGCGTTCAAGATCTTCAAAAGCAGCTTGTATTTGCGTTCTATAATTTCTCTAAAGTGAAAGACTCTAAGTGGTTCTACCTAGACTGTAAGCTTAAAAGATATTGTTTGCTCACCAAACAACTACCTTTGTCGGAGTGCACATATGATAACATTATGGCGCTTCAAAGTGGAACAAATCCGTTGTTTCTTACTTCTGCCTGGGGCGAGCCAGCCTCAACTGAGTGTCCGCGGAAGAGGTCTAGGCTGGGTGTTATCCACATGGGGGTCTCCAGAGAGTCCACTTTTGTGAATATGAGCCAGTCATCTTCTAGTTTGGATGTGAATCAAGGAAAACTTCCTCCATTTGCCCTATCCTTTAATGCTGCACCTACTTTTTTCCTGGGCCTCCATCTCAAGCTGCTCATGGAGCACAGAGATGTTACTTGGTCTGGACAGTTTTCTGGTGCTAACCCTCAGATTGCTAAGCAGGCTCAATCTGCATGCAATGATGATGATCGGATAAATTCCTTCCAGAAATATGAAAACAGCAACCTTAATGTTGCTGGAACCTCTGCCTGTTCTGAAGATACCGGAGAAACTGGAATAGATGCCATTGTCCAATTGCAGGAGCAGCAAGGGTACCATTCAGAGGCAGAACAATGCATTCTATCTCCCCAGCCTTTGCTTCTCAATGGCCATTCTTCTACTGGGAAGTCCAATGTTGGGTGCTATTCCCGTTTGAATGGTATCAATGTTCAAATTCCAACATTTGACCAAGTTGAGAAATCTTTTGATAGGGGAGCAGATATCAGTATCAGCCAACAGTCTGTTGATTTGAGTTGGAATGTGAATGATGGTGTCATTCGTAGCCCAAACCCCACTGCTCCCAGGAGTATGTGGCAAAGGAATAAAAATAGTTTTTCTTCATCGTTTGGATACCCCTCGCATATGTGGTCCGATGGAAAGGGTGACTTTTTCGGCAATGGTTTTGGTAATGGACCTAAGAAACCACGTACCCAGGTCTCATACACACTGCCTGTTGGAGGTTTTGATTTTAGCTCAAAGCAGAGAAGCCATCACCAGAAAGGGCTTCCTAACAAAAGAATCAGGCGGGCTAATGAGAAGAGGTTATCAGATGGTTCTAGAAGCTCTCAACGAAACCTAGAATCATTATCTTGTGAGGCAAATGTATTGATTACATTTGGGGACAGAGGATGGAGAGAATCTGGAGCCCAAGTTATATTAGAGCTTGGTGATCATAATGAATGGAAACTTGCTGTAAAAGTTTCTGGGGCTACAAAGTATTCATACAAGGCACATCAATTTCTGCAGCCCGGGACAGCAAATCGATTCACACATGCTATGATGTGGAAAGGGGGAAAAGATTGGATTTTGGAGTTTCCAGACCGAAACCAGTGGGCGCTTTTTAAGGAAATGCATGAAGAGTGCTACAACCGGAATGTTCGTGCTGCGTCAGTCAAAAACATACCTATTCCTGGTGTTCGCTTCATAGAGGAAATTGATGATAATGGAACTGAAGTACCATTTGTTCGCAATTCTCCTAAGTACTTCCGGCAGATTGAAACTGATGTTGATATGGCTTTGGATCCATCTCGTATCTTATATGACATGGATAGTGATGATGAACATTGGATTTCAAAAATTCAAAATTCTACAGAAGTTAACGAGGGTACCTGGGAAGAGTTCTCTGAGGATATGTTTGAGAAGGTGATGGATATGTTTGAGAAGGCTGCATACGTTCAACAGTGTGATGAGTTCACATTTGATGAATTAGATGAGCTCATGGTTGGATTTGGCCCAACAAAATTAGTCAGAATCATCCACGAGTATTGGCAACGAAAGAGGCAGAAAAAGGGAATGCCATTAATCCGACATCTCCAGCCTCCACTATGGGAAATGTATCAACAACAACTGAAAGAATGGGAGCAAGCAATGATAAAAAACAACACCGTCTCCTCCCATGGATGGCAGGAGAAAGTTGCATCTATTGAGAAACCAGCCATGTTTGCTTTCTGTCTGAAACCACGGGGTTTGGAAGTACTCAACAAGGGGTCAAAACAAAGATCACACAGGAAATTTCCAGTTGCAGGACAAAGCAATGCCAATTTGGGAGATCAGGATGGTTTCCATGCATTTGGAAGAAGATTAAATGGGTATGCTGTTGGAGATGAGAAAGCTATGTTTCCAGGTCATTACCATGAATCCTCAGATGCTTCCCAATTGTTTCAGTCATCAACAAGGGTATTTTCACCACGGGATGCAGGTAGCACAGGCTATTTCTCATTAAGCAGTGATGGATCTGAGTGGAGTCATCACCCTAGACTTCACAGGAACAAAACTATAGGTAAGAGAAATGGGGTTCATGGATGGAACATGGGCTTACCTGAGTGGCCAAGTCAGAAGCATTACCAATTGGAAGTATCACAGCGGCACAATAGTGAGCTGTTGGATGGATCGGATCTTGATGAGTTCAGGTTACGTGATGCATCTGGTGCAGCTCAGCATGCACTTAACATGGCTAAACTGAAGAGAGAAAAAGCTCAGAGATTTCTTTACAGAGCAGATCTGGCCATCCACAAGGCTGTGGTTGCTCTCATGACTGCTGAGGCAATCAAAGCGTCTTCTGAGGACTTAAATGGTGATGGGTAG 4905 42.61 MEHSVENSGGSEISKKSRSLDLQSIYRSKVSQEGDNKILKRKHSSENDGEVESGQGKKKSNSRKAVSLSSLKSLLKNSHKSLDEVYADGLGSGSSSGLPDSKKKELGLSQKLDDNSGLNSISRNLDNNVIRIPKRPRGFVRRRRFDGNHMLQPGRSSPASSKDVFVDQITKLSDDSATRVVPLKIKRKKGFDDFKENRSSGSSSAPHYKEGDEIKVVDNGNSSLRKRMPRKKQVKRKNLSSEGKSIVKEEAVPLADNPIKNCDEEDEENLEENAARMLSSRFDPNCTGFSSNGKASTPQSTNGLSFLLSPDQDCMIHRMNSLVGSESASVDTAGRVLRPRKQHKQKGLSRKRRHFYEIFSRNLDAYWVLNRRIKVFWPLDQSWYFGLVKDYDPERKLHHVKYDDRDEEWIDLRHERFKLLLLPSEVPGKADRKKMEMGDKCPDDENEERKHRKRGGKRDLPMEDDSCIGGYMDSEPIISWLARSSRRIKSSPFHVMKKQKTSYPSSNAVPSLLSDNTDSNAQGCLDGSSLKRDKDRLNNSAMPDEFTDAEKIEKSVPGSTICYKDEKVPIVYFRRRLKRFQGLHYVSEVHNVCGSASELVPSPVPVIDRLGTLEEFLLSLRQSDQFALLWSSDGAGLLKLSIPMINSRHFRFEFSLPALPVLNCAFGAENFWLFHTVLLHQYGVVMPKWPKVRLEMLFVDNLVGLRFLLFEGCLKQAVAFVCLVLTIFNQPNEQGRYVDLQFPVTSIKFKLSCVQDLQKQLVFAFYNFSKVKDSKWFYLDCKLKRYCLLTKQLPLSECTYDNIMALQSGTNPLFLTSAWGEPASTECPRKRSRLGVIHMGVSRESTFVNMSQSSSSLDVNQGKLPPFALSFNAAPTFFLGLHLKLLMEHRDVTWSGQFSGANPQIAKQAQSACNDDDRINSFQKYENSNLNVAGTSACSEDTGETGIDAIVQLQEQQGYHSEAEQCILSPQPLLLNGHSSTGKSNVGCYSRLNGINVQIPTFDQVEKSFDRGADISISQQSVDLSWNVNDGVIRSPNPTAPRSMWQRNKNSFSSSFGYPSHMWSDGKGDFFGNGFGNGPKKPRTQVSYTLPVGGFDFSSKQRSHHQKGLPNKRIRRANEKRLSDGSRSSQRNLESLSCEANVLITFGDRGWRESGAQVILELGDHNEWKLAVKVSGATKYSYKAHQFLQPGTANRFTHAMMWKGGKDWILEFPDRNQWALFKEMHEECYNRNVRAASVKNIPIPGVRFIEEIDDNGTEVPFVRNSPKYFRQIETDVDMALDPSRILYDMDSDDEHWISKIQNSTEVNEGTWEEFSEDMFEKVMDMFEKAAYVQQCDEFTFDELDELMVGFGPTKLVRIIHEYWQRKRQKKGMPLIRHLQPPLWEMYQQQLKEWEQAMIKNNTVSSHGWQEKVASIEKPAMFAFCLKPRGLEVLNKGSKQRSHRKFPVAGQSNANLGDQDGFHAFGRRLNGYAVGDEKAMFPGHYHESSDASQLFQSSTRVFSPRDAGSTGYFSLSSDGSEWSHHPRLHRNKTIGKRNGVHGWNMGLPEWPSQKHYQLEVSQRHNSELLDGSDLDEFRLRDASGAAQHALNMAKLKREKAQRFLYRADLAIHKAVVALMTAEAIKASSEDLNGDG* 1635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3767959 3777658 + Vvi4g379 Vvi4g379 785158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g379 1634 MobiDBLite consensus disorder prediction 1112 1127 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 430 468 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 513 541 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 85 122 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 430 464 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 7 31 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 1 68 - -
Vvi4g379 1634 PANTHER OS01G0179500 PROTEIN 2 1634 - -
Vvi4g379 1634 Pfam Enhancer of polycomb-like 1232 1328 IPR019542 -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 33 59 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 1095 1130 - -
Vvi4g379 1634 MobiDBLite consensus disorder prediction 193 212 - -
Vvi4g379 1634 Gene3D - 370 416 - -
Vvi4g379 1634 PANTHER PHD FINGER PROTEINS 2 1634 - -
Vvi4g379 1634 SMART TUDOR_7 365 423 IPR002999 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g379 - - - vvi:100264575 3226.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g379 Blo01g01361 . Bda01g00721 Bda03g00052 . . Bma04g00052 Bma01g02149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00336 . . . . . . Bpe04g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00376
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004344 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 43