Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g380 ATGACTGAACAGTTTGTGAAGATGAGCAACAGGAACCAGGAGCAGAGGAGACATTCCAGTCAGACAACAGGCACTCAGCCATCTAGGAAGCAGCCAAGAAAGGGAGGGAACCCAGTCCGGCTTCCATCAGCTGCTGGGCTTACTCAAGATGAGGAGTCTTCAAACACAAGGATATGTAAAAACTCAGCTTGTCGAGCTGTGCTATCTTTAGATGACATATTCTGCAAGAGGTGCTCTTGCTGTATCTGCCACTCATTTGATGACAACAAGGACCCTAGCCTATGGTTAGTCTGCACATCTGAGTTTGATAAGGGTGACACTTGTGGGTTGTCTTGCCACATTGAATGTGCAATTCTAAGGCAGAAAGTTGGGGTGGTTGATCTGGGGCAATTGATGCAGCTAGATGGGACCTACTGCTGTGCTTCTTGTGGAAAAGTCACAGAAATTCTTGGATGTTGGAAGAAGCAGTTTATCATAGCGAAGGAAGCTAGGCGGGTTGATGTTCTCTGCTATAGGATATCATTGTGTTATAGGCTTTTGGATGGGACATCCAGATTTAAAGAGCTACATAAAGTTGTAAGTGATGCCAAGGCCAAGCTCGAAACAGAGGTGGGTCCAATTAGTGGGGATTCTGCCAAAATGGCACGTGGCATCGTGAGCAGACTCTCAGTTGCTGCAGATGTGCAGAATCTCTGCTCTCTTGCTATTGAGAAAGTAGATGCAAGGCTCAACTCCATTTCTACTGCTAACTTCAATCACCGAGAAAACTCACTTGGTGCTGCTTTCATATTCCTATTTGAAGAAGTAACAGCTTCTTCTCTTGTTCTTGTTTTGGATGAACCAGATGCTTCACCTTCTGATGCAGTTAAAGGGTACATGCTCTGGTATTGCCCAAGCAGGGAAGAACCATCCTCCAAGGAGCCTATGCGCATCTTCCCAAGGACTCAGAAAAGGGTTCTAATATCAAATTTGCAACCTGGCATTGAGTATCTTTTCCGGATAATTCCTTATACTGATTCTGGCAGCTTGGGTCATTTTGAGGCAAAGTGTTTCACTAGGAATGTGGAGATAAACCACAAGAATTTTGAATCTGAAGTCGTCGTTCCACAAAATGAAATTAGTCCTGATAATGAAAGACTAGATACCAGGAATGAAACAGTGCCAAGGACTTCCAGTTTTAAGGTCCAGGACCTAGGAAAGGTTCTCTACCTTACTTCAGCAGAAGAACAAGGCTCTCTGGAGGGATTATGCAGTGCTGATGTGGAAGAATGCAGTGGTGGGAGCAGTGCAATGAGATATGAAACCCCAGAAGATGAAAAACCAATGCCAAATTCGCGTGAGCTTGACTTAAATGTTGTTTCTGTGCCTGATTTGAATGCAGAACTAACACCACCACTAGAGTCCTCCAGAGATGAAGACAATGAGTGCACCTTGGAGCAGAATGATCAATCAAGATCAAGTGGTAGCCACGACTCACAAACTTGCAAAATCAGGGCAATCAGAGAAGTTCCTGCTGTTGAATCCAGAACAGAGTTATGCAGGAAACAGACTCTGAGCTCAAAGAGTGAGGCATATGATTGCGTTAGCACTCTAATTAATGGTTCCCCATTGCAAGTCTGTGCTGGATCAGGCCATTTGGACAGGAGCTATGAGTATTGTGTGAAGATCATTCGATGGCTAGAGTGTGAAGGGCACATAGGACAGGAATTTAGGATGAAGTTCTTAACTTGGTTTAGCTTGAGATCAACCGAGCAGGAGCGGAGGGTTGTGCATGCATTTATCCAAACCCTAATCGAAGACCCAAGTAGCTTGGCAGGCCAGTTGATTGATTCATTCTCAGACATTGTGAAAAGCAAGAGGACCCGTAATGGTTTCTGCAGTGAACTATGGCATTGA 1896 44.67 MTEQFVKMSNRNQEQRRHSSQTTGTQPSRKQPRKGGNPVRLPSAAGLTQDEESSNTRICKNSACRAVLSLDDIFCKRCSCCICHSFDDNKDPSLWLVCTSEFDKGDTCGLSCHIECAILRQKVGVVDLGQLMQLDGTYCCASCGKVTEILGCWKKQFIIAKEARRVDVLCYRISLCYRLLDGTSRFKELHKVVSDAKAKLETEVGPISGDSAKMARGIVSRLSVAADVQNLCSLAIEKVDARLNSISTANFNHRENSLGAAFIFLFEEVTASSLVLVLDEPDASPSDAVKGYMLWYCPSREEPSSKEPMRIFPRTQKRVLISNLQPGIEYLFRIIPYTDSGSLGHFEAKCFTRNVEINHKNFESEVVVPQNEISPDNERLDTRNETVPRTSSFKVQDLGKVLYLTSAEEQGSLEGLCSADVEECSGGSSAMRYETPEDEKPMPNSRELDLNVVSVPDLNAELTPPLESSRDEDNECTLEQNDQSRSSGSHDSQTCKIRAIREVPAVESRTELCRKQTLSSKSEAYDCVSTLINGSPLQVCAGSGHLDRSYEYCVKIIRWLECEGHIGQEFRMKFLTWFSLRSTEQERRVVHAFIQTLIEDPSSLAGQLIDSFSDIVKSKRTRNGFCSELWH* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3778152 3790808 - Vvi4g380 Vvi4g380 785159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g380 631 Pfam PHD - plant homeodomain finger protein 59 177 IPR032881 -
Vvi4g380 631 SUPERFAMILY Fibronectin type III 266 341 IPR036116 GO:0005515
Vvi4g380 631 ProSiteProfiles Fibronectin type-III domain profile. 260 357 IPR003961 GO:0005515
Vvi4g380 631 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g380 631 PANTHER VIN3-LIKE PROTEIN 1 1 631 - -
Vvi4g380 631 CDD FN3 266 341 IPR003961 GO:0005515
Vvi4g380 631 Gene3D Immunoglobulins 263 355 IPR013783 -
Vvi4g380 631 MobiDBLite consensus disorder prediction 1 49 - -
Vvi4g380 631 MobiDBLite consensus disorder prediction 426 446 - -
Vvi4g380 631 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 631 IPR044514 GO:0010048|GO:0040029
Vvi4g380 631 MobiDBLite consensus disorder prediction 461 493 - -
Vvi4g380 631 Pfam Fibronectin type III domain 266 343 IPR003961 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g380 - - - vvi:100259403 1268.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g380 Vvi11g373 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g380 . . . . . . . . Cmo05g00725 . . Cma05g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00638 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001265 1 7 2 4 3 2 3 1 2 2 3 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 5 4 2 76