Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g383 ATGTCTAAACGCAAATCCCCGGCATTGGTAGCATTTCAATCTGGAAACCGCCTAATCGGTGAAGAAGCGGCCGGGATAGTCGCCCGCTATCCCGACAAAGTTTTTTCCTTTATCCGGGATATGATTGGAAAACCCTACAACAAAATTCAAGATTTTCTCGCGAAAATGTACTTACCATATAGTATAGTGGAAGATTACAGAGGCACGGCCGCGATTAGAGTTGATGATGGTACTGTTTATTCTCTGGAGGAGCTGGAAGCTATGATTTTAAGTTACGCGATAAAATTAGCAGAGTTTCACTCTAAGGTTCCAGTTAAGGATGCGGTGATTGCGGTGCCTCCATATCTCGGGCAGGCAGAACGCAGGGGGTTGCTTACTGCTGCACAATTGGCGGGTGTTAATGTGCTTGCGCTGATCAATGAGCATTCGGGTGTGGCATTGCAATATGGGATCGATAAGGATTTCTCGAATGGATCAAGGCATGTTGTGTTTTATGATATGGGATCAAGTAGTACTTATGCTGCACTTGTGTATTTTTCTGCTTATAATGCCAAGGAGTATGGAAAGACAGTCTCGGTTAACCAATTTCAGGTTAAGGATGTTATCTGGGATCCAGAGCTTGGTGGCCAAAATATGGAAATTCGTTTGGTGGAGTATTTTGCAGATGAGTTCAACAAACAAGTTGGGAATGGAGTTGATGTGAGGAAGTTCCCCAAGGCAATGGCTAAATTGAAGAAACAGGTTAAGCGGACAAAAGAAATTCTAAGTGCGAATACAGTTGCTCCAATATCAGTAGAATCCCTTTATGATGATCGAGACTTCAGGAGTACCATAACTCGTGAGAAGTTTGAGGAGCTCTGTGAAGATTTGTGGGAGAGATCTCTTATTCCTGCGAAGGAAGTGCTTAAGAATTCAGGTTTGAAGGTTGATGAGATATATGCAGTGGAGCTGATAGGAGGTGCCACTCGAGTGCCAAAGTTGCAGGCAAAGCTCCAGGAATTTCTTGGAAGGAAGGATCTGGACAGACATCTGGATGCTGATGAAGCTATAGTTCTTGGTGCTGCACTACATGCTGCAAATTTAAGTGATGGAATCAAATTGAATCGCAAGCTAGGAATGGTTGATGGTTCTTTATATGGACTTGTGGTTGAGTTAGATGGCCCTGGTCTTTTGAAAGATGAGAGCACTAGACAGTTAATTGTCCCAAGAATGAAAAAACTCCCCAGCAAGATGTTCAGATCCATTATCCATGACAAAGATTTTGATGTTTCATTTTCATATGAGAATGAAGATCTTCTACCACCTGGTGTTTCCTCTCCTAGATTTGCTCAGTATGCCGTGTCTGGTTTGGCAGATGCTAGTGCAAAATATTCTTCTCGGAACCTGTCCTCTCCCATTAAGGCAAATCTGCATTTCTCTCTCAGTAGAAGTGGAATACTTTCTCTGGATCGAGCAGATGCTGTTATTGAAATAACAGAATGGGTTGAAGTTCCCAAAGTGAATGTGACTCTGGAGAATTCAACTACTGCATCCCCCAATATATCAGTTGAAGTGAGTCCTCATAACACTTCAGAAGACAGCAATGAAAACTTGCATGGTGATGGTGGGATTAATAACACCTCCAACTCCACTGAAAATCAAAGTGACAAGGATCTTGGCACAGAAAAAAAACTGAAAAAGCGAACATTTAGGGTTCCACTGAAGGTAGTTGAGAAGACAGTGGGACCTGGAATGCCCCTTTCAAAAGAGTCTATTGCTGAAGCTAAACGCAAGTTGGAAGCATTAGACAAAAAGGATGCAGAGCGGCGAAGAACTGCTGAGTTAAAAAATAATCTGGAAGGATACATCTATACCACTAAAGAAAAGCTTGAATCATCTGAGGAGTTAGAGAAGATATCAACCACCCAGGAACGCCAGTCCTTTATTGAAAAGCTTGATGAGGTGCAAGAATGGTTGTATACTGATGGTGAAGATGCTACGGCTGCTGAGTTTCAAGAACGTCTAGATTTGTTAAAATCTATTGGTGACCCGATATTTTTCAGATTGACTGAGCTTACTGCACGGCCAGCAGCAATGGAAGATGCTCGCAAATACCTTGGTCAGCTGAATCAGATTGTACAAGACTGGGAGACAAAGAAACCTTGGCTTCTGAAAGATAAAATAGATGAGGTCCTGAGTGATGGTGACAAGGTCAAAAATTGGTTGGAAGAGAAAGAGGCTGAGCAGAAAAAGAGTTCTGGATTCAGCACTCCTGCATTTACCTCAGATGAGGTGTATGAGAAGATTTTCAAATTTCAAGAGAAGGTTGCCAGCATCAACCGAATTCCTAAGCCAAAGCCAAAAATTGAGAAGCCTCCAAAGAAGGAAACTGAGAACAATGGGGCTAGCAGTGAGGAGAAGGCGAATGCTTCCAACTCAACATCAGAAAAGACTCCCTCCTCCCAAAACGATCAATCAGCTGCAGGGGATTCAGATGGCAAGCCCAACGAGGAAGCAGAAGGAGATGCCCATGATGAGTTATGA 2523 42.89 MSKRKSPALVAFQSGNRLIGEEAAGIVARYPDKVFSFIRDMIGKPYNKIQDFLAKMYLPYSIVEDYRGTAAIRVDDGTVYSLEELEAMILSYAIKLAEFHSKVPVKDAVIAVPPYLGQAERRGLLTAAQLAGVNVLALINEHSGVALQYGIDKDFSNGSRHVVFYDMGSSSTYAALVYFSAYNAKEYGKTVSVNQFQVKDVIWDPELGGQNMEIRLVEYFADEFNKQVGNGVDVRKFPKAMAKLKKQVKRTKEILSANTVAPISVESLYDDRDFRSTITREKFEELCEDLWERSLIPAKEVLKNSGLKVDEIYAVELIGGATRVPKLQAKLQEFLGRKDLDRHLDADEAIVLGAALHAANLSDGIKLNRKLGMVDGSLYGLVVELDGPGLLKDESTRQLIVPRMKKLPSKMFRSIIHDKDFDVSFSYENEDLLPPGVSSPRFAQYAVSGLADASAKYSSRNLSSPIKANLHFSLSRSGILSLDRADAVIEITEWVEVPKVNVTLENSTTASPNISVEVSPHNTSEDSNENLHGDGGINNTSNSTENQSDKDLGTEKKLKKRTFRVPLKVVEKTVGPGMPLSKESIAEAKRKLEALDKKDAERRRTAELKNNLEGYIYTTKEKLESSEELEKISTTQERQSFIEKLDEVQEWLYTDGEDATAAEFQERLDLLKSIGDPIFFRLTELTARPAAMEDARKYLGQLNQIVQDWETKKPWLLKDKIDEVLSDGDKVKNWLEEKEAEQKKSSGFSTPAFTSDEVYEKIFKFQEKVASINRIPKPKPKIEKPPKKETENNGASSEEKANASNSTSEKTPSSQNDQSAAGDSDGKPNEEAEGDAHDEL* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3800994 3812258 - Vvi4g383 Vvi4g383 785162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g383 840 SUPERFAMILY Actin-like ATPase domain 2 153 IPR043129 -
Vvi4g383 840 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 607 690 IPR029048 -
Vvi4g383 840 Gene3D - 154 341 - -
Vvi4g383 840 PRINTS 70kDa heat shock protein signature 108 128 - -
Vvi4g383 840 PRINTS 70kDa heat shock protein signature 1 12 - -
Vvi4g383 840 PRINTS 70kDa heat shock protein signature 312 328 - -
Vvi4g383 840 PRINTS 70kDa heat shock protein signature 344 364 - -
Vvi4g383 840 MobiDBLite consensus disorder prediction 511 557 - -
Vvi4g383 840 PANTHER HSC70CB, ISOFORM G-RELATED 1 810 - -
Vvi4g383 840 MobiDBLite consensus disorder prediction 824 840 - -
Vvi4g383 840 MobiDBLite consensus disorder prediction 511 548 - -
Vvi4g383 840 Gene3D - 2 359 - -
Vvi4g383 840 CDD HYOU1-like_NBD 1 359 - -
Vvi4g383 840 ProSitePatterns Heat shock hsp70 proteins family signature 3. 315 329 IPR018181 -
Vvi4g383 840 PANTHER BNAC07G50110D PROTEIN 1 810 - -
Vvi4g383 840 MobiDBLite consensus disorder prediction 777 795 - -
Vvi4g383 840 Pfam Hsp70 protein 2 679 IPR013126 GO:0005524|GO:0140662
Vvi4g383 840 MobiDBLite consensus disorder prediction 773 840 - -
Vvi4g383 840 MobiDBLite consensus disorder prediction 796 823 - -
Vvi4g383 840 Gene3D - 36 88 - -
Vvi4g383 840 Gene3D - 580 693 IPR029048 -
Vvi4g383 840 Gene3D Actin; Chain A, domain 4 208 293 - -
Vvi4g383 840 SUPERFAMILY Actin-like ATPase domain 159 361 IPR043129 -
Vvi4g383 840 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 369 512 IPR029047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g383 K09486 HYOU1; hypoxia up-regulated 1 - vvi:100254281 1593.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g383 Vvi9g380 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g383 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005248 2 1 2 2 2 0 2 1 0 1 1 1 1 0 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 3 37