Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g384 ATGGGGAATAAGGTGAAGGAGGAAGAGAAAATTGAGAGGACAATTCGGGGCCTTTTGAAGCTTGCTGAGAACCGGAGATGTATCAATTGCAACAGTTTGGGGCCACAATACGTTTGCACGACTTTCTTGACATTTGTTTGCACAAACTGCAGTGGAATTCATCGAGAGTTCACACATCGGATAAAATCTGTATCGATGGCTAAATTTACTACAGAAGAAGTCACTGCTCTTCAAGCAGGGGGAAATGAGCGAGCAAGGGAAATTTATCTCAAAGATTGGGATCCACAACGACATTCCCTCCCTGACAGCAGTAACCTTCACAAACTCCGGGAATTTATTAAGCATGTCTATGTGGATAGAAAATATACTGGCGAGAGGAATGTCGACAAGCTCCCAATGGTGAAAGTGGGTAACAGTGGATCTAGGAACTCAAGTCTTGAGGTTGCATGTGAATGGCGTAACAGTGAAAGATCTAGTCCTAGCGGAAGAAGTGGTGACAATAGTATCAGATATTACTACGATGAAAGAAGAAGCCCTCGATTTTCCCACGAACATTCAAGATCTGGTGGTTTCAGGAGAAATCCTGTCCGTTTTGAGGTAGTTGATGACAGGGTTCGAGATGATAGACTTGGAGGTGGCAGACGAACTGAAAGCAACAGATTTTCTAATGGAGAATCAAGGCAAATTAGTAGATTGCCTGACTCTCAAAGGAAGGTGGATGTATCCAGTTCCCCAGAGGTACGCCCGGTAAGCAATATTCTGGGGGAAAATGTTTCTCCTCTACATGCGGGTGAACTTCCTAATACAAATGACAAGAAGGATGCCAATGCCTCAGCTCATCCAAAGGTCAGTTACATGCTGAACCATGCTGGGAATTTGTTTTATGTATGA 891 43.77 MGNKVKEEEKIERTIRGLLKLAENRRCINCNSLGPQYVCTTFLTFVCTNCSGIHREFTHRIKSVSMAKFTTEEVTALQAGGNERAREIYLKDWDPQRHSLPDSSNLHKLREFIKHVYVDRKYTGERNVDKLPMVKVGNSGSRNSSLEVACEWRNSERSSPSGRSGDNSIRYYYDERRSPRFSHEHSRSGGFRRNPVRFEVVDDRVRDDRLGGGRRTESNRFSNGESRQISRLPDSQRKVDVSSSPEVRPVSNILGENVSPLHAGELPNTNDKKDANASAHPKVSYMLNHAGNLFYV* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3814570 3816956 + Vvi4g384 Vvi4g384 785163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g384 296 MobiDBLite consensus disorder prediction 216 250 - -
Vvi4g384 296 PANTHER ARFGAP/RECO-RELATED 1 282 IPR044820 GO:0005096
Vvi4g384 296 CDD ArfGap_AGFG 12 122 - -
Vvi4g384 296 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vvi4g384 296 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vvi4g384 296 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vvi4g384 296 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vvi4g384 296 SUPERFAMILY ArfGap/RecO-like zinc finger 12 123 IPR037278 -
Vvi4g384 296 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Vvi4g384 296 MobiDBLite consensus disorder prediction 208 277 - -
Vvi4g384 296 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vvi4g384 296 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 282 - -
Vvi4g384 296 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g384 - - - vvi:100853277 561.607
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g384 Vvi11g370 ECH
Vvi4g384 Vvi9g394 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00335 . . . . . . Bpe04g00038 . . . . . Cma09g00486 . . . . . . . . . . . . . . . . . . . . . . Cme04g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011757 1 2 0 1 1 0 2 1 0 1 1 1 2 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 30