Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g389 ATGATTTTCAATGTGAATGAAAGAGACGTTGTTAAGTCATGTGCTCAGCATTCCAATGGAGAGTGTATGGAGATCAAAGAGCCAACTGATCATGTAGAGATCACAGAAAAGGAATTGCTAGAGAAAGGCTATATGCAGTACGGATGTCCACATTATCGGAGAAGGTGCCGCATTAGAGCTCCATGTTGCAATGAGATTTTTGATTGTCGCCATTGTCATAATGAAGCAAAGAATAGTATTAAGGTTGACAAGGCACAGAGACATGACATTCCACGGCACCAAGTCCAGCAGGTGATATGTTCACTCTGTAACACTGAACAAGAGGTTCGTCAAGTTTGTATTAACTGTGGTGTATGTATGGGGAAATACTTCTGTGAGACCTGCAAACTATTCGATGATGATACATCTAAGAAACAGTATCATTGCAATGGGTGTGGAATTTGCAGAATTGGAGGGCGAGAGAACTTCTTCCACTGTTACAAATGCCGTTGCTGCTACTCTGTTCTGCTAAAGAACAGCCATCCTTGTGTGGAAGGAGCAATGCATCATGACTGCCCTGTTTGCTTTGAGTATTTATTCGAGTCAACGGATGATGTGACTGTTATGCCGTGTGGACATACGATTCACCAAAACTGTTTGAAGGAGATGAGGGAACATTTACAATATGCATGCCCTCTCTGCTCCAAGTCTGTTTGTGATATGTCCAAGGTGTGGGAAAAATTTGACATGGAGATTGCAGCTATACCAATGCCAGAACCTTATCAGAACAAAATGGTTTGGATCCTTTGCAACGATTGTGGAAAAACCTCGAAAGTGCATTTCCATGTCCTGGCTCAGAAATGCCTAAATTGCAAGTCATACAACACTCGCCAAACCAGAGGCTGA 885 42.37 MIFNVNERDVVKSCAQHSNGECMEIKEPTDHVEITEKELLEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIKVDKAQRHDIPRHQVQQVICSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSKKQYHCNGCGICRIGGRENFFHCYKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYLFESTDDVTVMPCGHTIHQNCLKEMREHLQYACPLCSKSVCDMSKVWEKFDMEIAAIPMPEPYQNKMVWILCNDCGKTSKVHFHVLAQKCLNCKSYNTRQTRG* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3855436 3861860 + Vvi4g389 Vvi4g389 785168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g389 294 Pfam Zinc-ribbon 232 290 IPR039512 -
Vvi4g389 294 ProSiteProfiles Zinc finger CTCHY-type profile. 120 184 IPR017921 -
Vvi4g389 294 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 7 294 - -
Vvi4g389 294 Pfam Ring finger domain 184 227 IPR001841 -
Vvi4g389 294 ProSiteProfiles Zinc finger CHY-type profile. 42 118 IPR008913 GO:0008270
Vvi4g389 294 ProSiteProfiles Zinc finger RING-type profile. 185 228 IPR001841 -
Vvi4g389 294 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 7 294 - -
Vvi4g389 294 Pfam CHY zinc finger 49 130 IPR008913 GO:0008270
Vvi4g389 294 SMART ring_2 185 227 IPR001841 -
Vvi4g389 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 230 IPR013083 -
Vvi4g389 294 SUPERFAMILY RING/U-box 184 233 - -
Vvi4g389 294 SUPERFAMILY CHY zinc finger-like 46 120 IPR037274 GO:0008270
Vvi4g389 294 Gene3D - 256 294 - -
Vvi4g389 294 SUPERFAMILY Zinc hairpin stack 121 178 IPR037275 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g389 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - vvi:100252623 644.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g389 Blo01g01360 . Bda01g00720 . . . . Bma01g02148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000646 2 6 1 2 2 3 4 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 4 3 3 4 3 8 4 3 101