Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g39 ATGCGTAAAACGCTGCAGCGAAAACCCAAATGCCACAGACTGCAAAGTTTCATTCCAAGAATCGAAGATAGCAAAATGTTCTCAATTGCAGCCATTAATGATACAGATTCCAAAGGTCAATGGGAACCCCTAGCGCCCACCAAGGAAGCCCAGGAATTTCATCTTTCACAAACTTATCATGAAGGACTTCGTAAATTACAAGCTAAAGAATATGAGAAGGCTCGAGAACTTTTAGAAGCTGTCCTCAAAGATCCTCTGATATCAAAGGCTCAAGTGGATAGCAATGCGACTGATGGGCATCTGTTACAGCTCAGATTTTTGGTGCTGAAGAATCTTGCCACTGTTTTCCTTCAACAAGGTTCTGACCATTATGAGAGGGCTTTAAGCTGCTACCTTCAAGCTGTAGAAATTGACACCAAGGACTCTGTTGTCTGGAACCAGCTAGGAACCTTATCATGCTCAATGGGATTATTGAGCATTTCACGTTGGGCATTTGAGCAGGGGCTTTTTTGCAGCCCTAACAATTGGAATTGCATGGAGAAACTCTTGGAAATTCTTATTGCTATTGGCGATGAGGTTGCCTGTCTTTCTGTTGCAGAATTGATCTTGAGGCACTGGCCATCACATGCTCGTGCATTGCATGTCAAAAATACCATTGAAGAGTCGGACCCAGTTCCATTTGCTCCACGAGGTATAGATAAACTGGAACCTAAACATGTTCGACTTAAATTCCCTGAAAAGAGAAAGGCAGAAGATGAAAATATAGGTGAGGGTATTTCATTGAAAAAGCAGAACCAGAATATAGATCTCCACCTGGCAGAAGCCTCATGGGCGGCCCTCACTGATGCACTGCTGGCAATCTTACATCCACTGAATGGATGTGGTTCTGAGCTGGGAGCTGAAAAAATGTGCACATCACCCAATATCAGATTAAGTATACACTTGCCTTCTAGTGCAGAAAATATTGTGCCGCCTGGTGAAAGGAAAGGGCTCAAGTTTAATCCAGTTGGTGAAAATATGTGTCTGGGTGATTGTAAGTCTGAAAGAGCAAGTACTCTAAAAGAAAAAGAAGCAAATGCTTTTGAAGAACAACCTCAGGAGAGGCGGAGTACCCGTCTTGAAAGGCTTCGGAGTCGTAAACCTGAGAAAGAAGAAGTAGATTTTGCCTCTGGTAAGGATCTGCCGAAAGCAGTAATTCAGTTTCTGGAACCTTTTATTGTTGGTGGACCAGGACTTAGAAATTCTGATCATTCTGCTAGTTCGTCTGCTTCTTGTCCTGAAAGTCAAGCTAATCTATCAGAGAATGAATGTAGTGATGTTGCTAAATTTGTGAAGGAAACTTCAAAAAATTATGGTGCTCACCATATGGGTCACTTGCTTTTAGAAGAGGTTGCAAATAGAGACCTTTTATATCAGGATTATTTTATCAAATTCCTGGAGTTGGAGAAATTGACTAGACATGGGGGCCTGGATAGAACACCTGAATGTAGTCTTTTTCTTGCTGAGCTGTACTATGACCTTGGTTCATCTTCTGAGGCATCCAGTCTGTCAGACTACATGGAGGATGTAACATACCATCTTTGTAAGATCATTGAATCAGTAGCTTTGGAATATCCTTTCCACTCAAGTGGAGTAGCCGGAAATGCAAATTGTTCTTTAACTGATAGTGGTCAAGGTGCTGGTAGAATATCACTGGACAACTCTGTTAGCCAGAATTCACTTTTAGACAGCTCATTCTTGAGCAATAAACAGTTTTTTTGGGTTCGGTTTTTCTGGTTAAGCGGGCGATTATCTATTTTGGAAGGTAACAGGGCAAAAGCTCAGAATGAATTTTTGATTTCCTTGTCACTTTTGTCTAAGAAGGAAGATACGAAAGACACTCTTGGTTCTGTCCACCTGCCATACTGCAAGTTTACTAAAGAGCTAACCATTGATAGAGTTCTCCATGAAATTAATCTATTAAAGATTGATTTCCTCCTGAAGCAGACTGTGGGTGAGATGATCGAGAAAGAAATGTATTTGGAATGTGTAAACTTAATTGCTCCACTTCTGTTCTCTACAAAAGATGCTCACCTTGACATGTTGCCTGCTAAAGAAGCTGAGGGGGTTACATCAGTTGAACTTTCTGCTATAGATGTTTTGATAAAAGCATGTGAAAAGGCAAAGCTAGTAGACACCGAGTTGTATTTGCTTTGTCACAGGAGGAAGCTGCAAATACTCACTGCCGCAGCTGGTATGGAAGAGTATCTTACTTCACACAAACCCTTCCATGAGAGGTCAGGGTCAAAAACACTTTCTGCTTCTGAAATAGAATCACAAGAAAGTTCAAGCAAGCACTGGAATTCCTTGGTGGCAGAGGAAGTGAAGGCAATTTCCCAGTGTGCATCACAAGTGAAGAGCTTCAATGATCAATGCGGAGAATCTAATGCCATTATTGTTCCGATGAGCATCATTGGTGACATTCAAACTTTGCTGCTGGCAGTCATGTGCAATTTTGCAAACACATTCCTCAAAAAGAAATCTTCTGGGCTAGTAACTGTGGATCAATCTGAGCAAAAGCAGAGATGCTGCTTTGTTGACATAGCCATTGCATTCTGCAAACTTCAACATCTCAATCCATCTACACCTGTTAAAGCTCATATTGAATTAGTTGTGGCAATCCATGACTTGCTTGCTGAGTATGGTCTCTGCTGTGCGGGTGACAGTGGCGAAGGGGAGGAAGGAACATTTCTCAAACTTGCAATAAAGCATCTACTAGCCTTGGATATGAAGCTGAAATCCAACTGTCAGTCTTCAAACAGGGAAACAACTCAATGTGATGAACAGATTTCTCATAATAATAATGTTAAAACATCTCTAAATGAATTAAAATCAGATGCATTAAATATGGAATCAGGTCGAATGGAACTAGACGAAGATCATGCTGTAGAGAAGGATTTCAATAAAGTTGAAAAAATAAGTGATGAATTTGTTGAATGTGGAAAAGAACTTACCGAAGATGAAAGGGAGGAGCTTGAGTTAGGAATTGATAATGCTTTGGATCAATGTTTTTTCTGCTTATATGGTTTAAACCTTAGATCTGATTCTTCCTATGATGATGATCTAGCCTTGCACAAAAATACTAGCCGTGGAGATTATCAGACCAAGGAACAGTGTTCTGATGTCTTTCAATATATACTGCCCTATGCAAAGGCCTCATCTAGGACTGGGTTGATTAAACTACGGAGAGTATTGAGAGCTATACGCAAACACTTTCCACAACCTCCAGAAGATGTTTTGGTTGGAAATCCAATAGATAAATTTTTAGATGATCCTGATTTATGTGAAGATAAACTTTCAGAGGAGGCTGGATCTGATGGCTTTGTTGAATCCATAATGAAAACATTTCCTGATGCAGGAGGCATTAAACAATACAAGGCTCCATCAGTGGGGAGCTCACAGCCCTATTTGGAGGTTTATTGCAACTTGTATTATCTCTTAGCTCAGTCTGAGGAAACGAATGCAACCGATAAATGGCCTGGTTTTGTACTCACCAAGGAAGGGGAAGAATTCGTACAGCAAAATACAAACCTTTTCAAGTATGATTTAATGTATAACCCTCTACGCTTTGAGAGTTGGCAGCGACTTGCAAATATATATGATGAGGAGGTGGATTTGCTGCTAAATGATGGAAGTAAGCATATAAATGTTGCTGGATGGAGGAAGAATGCTAGTTTACCTCAGAGGGTTGAGACAAGCCGAAGGAGGAGTCGGCGGTGTTTATTAATGAGTTTGGCCTTGGCCAAGACATCAGTTCAGCAGTCTGAGATACACGAGTTATTGGCATTGGTATACTATGACAGCCTTCAGAATGTGGTACCATTTTATGATCAACGATCAGTTGTACCCTCAAAGGATGCAGCATGGACAATGTTCTGTCAGAACTCAATGAAACATTTCAAGAAAGCCTTTGCACATAAGCCAGATTGGTCACATGCATTCTACATGGGAAAACTCTCTGAGAAGCTTGGATATCCACATGAGCTATCGTTTTCTTATTATGATAAGGCTATTAATTTAAATCCATCAGCTGTGGATCCTTTCTACAGGATGCACGCTTCTCGTTTAAAGTTACTTTATACAAGTGGAAAACAGAATTTTGAGGCTTTGAAGGTTGTTGCAAGACATTCCTTTAATAAGTCAACAGAGGAGAATGTCATGAATATACTTAGTAGAATGAGTCCTGAAATTCTCAACTTACCAGCAGATGACATGGATGGAAACGCTCAAGTTAATCCTGAGGAGAGAAAGGATGCAGAATCCCATCAATTGGAAGAGGTGTGGCATATGCTTTACAGTGATTGCCTTTCTTCCCTTCAAATTTGTGTGGAAGGGGATCTCAAGCATTTTCATAAAGCCAGATATGTGCTTGCTCAAGGGCTGTACAGAAGGGGTGAACGTGGTGGTAGTGAGAGGTCAAAGGATGAACTTTCCTTTTGCTTCAAATCATCTCGCTCTTCATTTACTATTAATATGTGGGAGATTGATGGTATGGTAAAAAAAGGAAGACGCAAAACAATGGGTCTTGCTGGAAACAAGAAGGCATTGGAAGTCAACTTGCCGGAAAGTTCCCGAAAATTTATTACCTGCATTCGGAAGTACATGTTGTTCTATTTGAAACTATTGGAAGAGACTGGAGACATCTCTACCCTTGACAGGGCTTATATATCTCTTCGGGCAGATAAGAGGTTCTCACTGTGCCTTGAAGATCTTGTTCCAGTAGCTCTTGGAAGATACATTAAAGCCCTAATTTCATCCATGAGGCAAGCTGAGACGGTTGGCTCTACTGCTGCAAGCAGATCTGAGCATATGCTGGAGAAAATGTTCACGTTATTTATGGAACAGGGAAGCTTATGGCCAGATTTATGCAGTTTGCCCGAGATGAGGAGCACAGAGTTATCAGAGAGTAGCTTATATGGATACCTCTACCAATACATCCAGTTATTGGAAAGAAATGTCAGGCTGGAAACACTAGAAGCAATAAATGAGAAGATTCGGAAGCGCTTTAAGAATCCAAAGTTGGCTAATAGTAATTGTGCTAAAGTTTGCAAGCATGCTTCAGTTGCTTGGTGTCGATCTCTTATAATTAGCTTGGCCTTGATCACACCATTACATGCTGAAAGCGTGGTCCAAGCCCTTCATATGTCAGATGGTGGTTTTGAAAACACCCAGCTGCTTTGTCTTGATCTGCAAACAAATGAATTGTGGAATTCTTCATTTGAGGATCTGACCCATGTGAAAAACCTTGAAACAAAATGGGTCCCACTGTTGTCTAAAATTAAGAATCTCATTATTAGGAAAGCCTCAGATGAAAATTTGGAGACTGCCAATACTTTGCTAAGATGTTGTTACAATTTCTATCGTGAGAGCTCCAGCATAATGCTCCCATCTGGGATCAACCTTTATTCAGTGCCATCCCGGTTAGCAACAGACACACAAATTCACCTAGGAATGAATGGGGTTGAAATCGTCGATTTGAGTGTTCCTCGGAAGCTTCTTTTGTGGGCCTATACACTACTGCATGGCCGTTGCACAAGCATATCAGTGGTTGTAAAGCATTGTGAAGAAAATGCTAAGTCGAGGATGAAAAAAGGAGCAGGCACCTCTTCCACACTCCCAAATACAAGCATAACCAGTGCCACCACTACTCACACAGGTACCGGGAAAGATGGAGGTGGTGAAGCTGAGGCTGCTGCATTAGCCACAGCAGCAGCTGTTTCTTTGCCAGAAGGCGACAGCATACGTGGCCTCAATTGCTCTGGTGAGACTCAAAAGAGCTTGCTTGCTGCTCCCCATTTGCACCAGTGTACCAGCAGCAGTGCAGAAAAGAGTAATGTGAGTGTGCATGAAGCAGGAGATCCTGAGAAGGCCTAA 5913 41.37 MRKTLQRKPKCHRLQSFIPRIEDSKMFSIAAINDTDSKGQWEPLAPTKEAQEFHLSQTYHEGLRKLQAKEYEKARELLEAVLKDPLISKAQVDSNATDGHLLQLRFLVLKNLATVFLQQGSDHYERALSCYLQAVEIDTKDSVVWNQLGTLSCSMGLLSISRWAFEQGLFCSPNNWNCMEKLLEILIAIGDEVACLSVAELILRHWPSHARALHVKNTIEESDPVPFAPRGIDKLEPKHVRLKFPEKRKAEDENIGEGISLKKQNQNIDLHLAEASWAALTDALLAILHPLNGCGSELGAEKMCTSPNIRLSIHLPSSAENIVPPGERKGLKFNPVGENMCLGDCKSERASTLKEKEANAFEEQPQERRSTRLERLRSRKPEKEEVDFASGKDLPKAVIQFLEPFIVGGPGLRNSDHSASSSASCPESQANLSENECSDVAKFVKETSKNYGAHHMGHLLLEEVANRDLLYQDYFIKFLELEKLTRHGGLDRTPECSLFLAELYYDLGSSSEASSLSDYMEDVTYHLCKIIESVALEYPFHSSGVAGNANCSLTDSGQGAGRISLDNSVSQNSLLDSSFLSNKQFFWVRFFWLSGRLSILEGNRAKAQNEFLISLSLLSKKEDTKDTLGSVHLPYCKFTKELTIDRVLHEINLLKIDFLLKQTVGEMIEKEMYLECVNLIAPLLFSTKDAHLDMLPAKEAEGVTSVELSAIDVLIKACEKAKLVDTELYLLCHRRKLQILTAAAGMEEYLTSHKPFHERSGSKTLSASEIESQESSSKHWNSLVAEEVKAISQCASQVKSFNDQCGESNAIIVPMSIIGDIQTLLLAVMCNFANTFLKKKSSGLVTVDQSEQKQRCCFVDIAIAFCKLQHLNPSTPVKAHIELVVAIHDLLAEYGLCCAGDSGEGEEGTFLKLAIKHLLALDMKLKSNCQSSNRETTQCDEQISHNNNVKTSLNELKSDALNMESGRMELDEDHAVEKDFNKVEKISDEFVECGKELTEDEREELELGIDNALDQCFFCLYGLNLRSDSSYDDDLALHKNTSRGDYQTKEQCSDVFQYILPYAKASSRTGLIKLRRVLRAIRKHFPQPPEDVLVGNPIDKFLDDPDLCEDKLSEEAGSDGFVESIMKTFPDAGGIKQYKAPSVGSSQPYLEVYCNLYYLLAQSEETNATDKWPGFVLTKEGEEFVQQNTNLFKYDLMYNPLRFESWQRLANIYDEEVDLLLNDGSKHINVAGWRKNASLPQRVETSRRRSRRCLLMSLALAKTSVQQSEIHELLALVYYDSLQNVVPFYDQRSVVPSKDAAWTMFCQNSMKHFKKAFAHKPDWSHAFYMGKLSEKLGYPHELSFSYYDKAINLNPSAVDPFYRMHASRLKLLYTSGKQNFEALKVVARHSFNKSTEENVMNILSRMSPEILNLPADDMDGNAQVNPEERKDAESHQLEEVWHMLYSDCLSSLQICVEGDLKHFHKARYVLAQGLYRRGERGGSERSKDELSFCFKSSRSSFTINMWEIDGMVKKGRRKTMGLAGNKKALEVNLPESSRKFITCIRKYMLFYLKLLEETGDISTLDRAYISLRADKRFSLCLEDLVPVALGRYIKALISSMRQAETVGSTAASRSEHMLEKMFTLFMEQGSLWPDLCSLPEMRSTELSESSLYGYLYQYIQLLERNVRLETLEAINEKIRKRFKNPKLANSNCAKVCKHASVAWCRSLIISLALITPLHAESVVQALHMSDGGFENTQLLCLDLQTNELWNSSFEDLTHVKNLETKWVPLLSKIKNLIIRKASDENLETANTLLRCCYNFYRESSSIMLPSGINLYSVPSRLATDTQIHLGMNGVEIVDLSVPRKLLLWAYTLLHGRCTSISVVVKHCEENAKSRMKKGAGTSSTLPNTSITSATTTHTGTGKDGGGEAEAAALATAAAVSLPEGDSIRGLNCSGETQKSLLAAPHLHQCTSSSAEKSNVSVHEAGDPEKA* 1971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 480826 497305 + Vvi4g39 Vvi4g39 784818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g39 1970 MobiDBLite consensus disorder prediction 1874 1906 - -
Vvi4g39 1970 Gene3D Tetratricopeptide repeat domain 47 224 IPR011990 GO:0005515
Vvi4g39 1970 SUPERFAMILY TPR-like 58 194 IPR011990 GO:0005515
Vvi4g39 1970 Coils Coil 995 1015 - -
Vvi4g39 1970 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 26 1902 IPR033053 -
Vvi4g39 1970 MobiDBLite consensus disorder prediction 355 389 - -
Vvi4g39 1970 MobiDBLite consensus disorder prediction 1876 1901 - -
Vvi4g39 1970 MobiDBLite consensus disorder prediction 1949 1970 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g39 K17613 CABIN1; calcineurin-binding protein cabin-1 - vvi:100254195 3759.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g39 . . . . . . . . . . Cma01g01445 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02317 Csa03g04535 Chy04g00168 . . . . . . . . . Sed05g1516 Cmo01g01499 . . . . . . Cpe02g00503 Bhi09g02556 Tan01g3903 Cmetu04g0903 . Hepe01g2205 Mch11g0755 . . . . . . . . . . . Cme04g00193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009721 1 3 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 32