Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g392 ATGTCATCGGAAACAAGGTCACCTCTACCTCTACTGCTCCGACGACACACAAGCAGTGAAAGCAAGAACTTAGCTACGGTTTCTAGCAGTCTCTTGCCAGCATTTGGGACTGTTATAGATGAAGGATATTTACAACTGAAGAAATATACAATCGCTCCCTATGATCGTAGGTATCGGTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATCTCCATTTGAGCTAGCATTCAAAAAGGTAGCAACTGGGTCACTCATGCCCGTTGATCTGACTGTTGATGCCTTCTTTGCAGCTGATATCATCCTTACCTTTTTTGTCGCTTACCTGGACAAATCAACCTATCTCCTTGTAGATGACCACAAGAAAATAGCAATAAGGTACGCCACAAAATTGTGGCTCCCCATGGACATAGCTTCAACTCTGCCATTTCAGTCTATGTACAGAGTCATCACGGGCAAAATGCACCAAGGGGACATCTTTGGTTTTCTCAACCTGCTGAGACTGTGGCGGCTCAGACGTGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACACGCGTTTTAGCTACTTCTGGACAAGATACTGTAAACTAATTTGTGTGACGCTTTTTGCAGTGCACTCAGCAGGTTGCTTTTACTACTGGCTGGCCATCCATCATAAAACATCAAAGAAGACATGGATTGGAGCTCAGATTACGGACTTTGAACACAGAAGCATCTGGCTAGGTTACACCTATTCTATATATTGGTCAATTGTCACCCTCACAACAGTTGGCTATGGAGACTTGCATGCAGAAAATACAGGAGAGAAGGTCTTCAATATATTGTACATGCTATTCAACATTGGCCTCACCGCTTATTTAATTGGAAACATGACCAATCTCATTGTCCACAGTGCTATTCGAACATTTGCCATGAGGGATGCAATCAATGAGATTTTGCGATATGCAAGCAAGAATCGACTTCCAGAAGGCTTGAAAGAGCAAATGTTGGCACACATGCAACTCAAGTTCAAGACAGCTGAATTGCAGCAAGAAGAAGTGCTAGAGGACCTGCCCAAGGCAATAAGATCCAGCATAGCTCAGCATCTTTTCCATAAAACTGTTGAAAAGGCCTATCTTTTCAAAGGGATCTCTGATGACCTTGTCACCCAGTTGGTATCAGAGATAAAAGCAGAATATTTTCCTCCTAAGGTTGATATCATCTTACAAAATGAGATACCTACAGATTTCTACATTATAGCAGCAGGAGCAATGGATGTGCTGATATACAAGAATGGCACAGAGCAGTTTTTGACCAAACAAGGACCTGCAGAGATGGCAGGAGAAATTGGAGTGATTTTCAACATCCCACAACCTTTTACAGTGAGAACTAAGAGACTTTCCCAGGTCATCCGGATAAGTCATCATCATTTCAAGCAAATAGTGCAGCAACAGAACGAAGATGGAAAGACAATCATCTTGAATTTTGTTCAGTATTTGAGGAGTTTAAAGCAAGAGCTGCAGCAAGAAATACCATTTCTAACAGAATTGTTGGGTGACATGAACATAGAGCATGTGGAATCAAGTCAGGAACCACAAAATACAGAAACATTAAGATCGGATAATGATGAAGGCGCACATATTGAAGGAACACCAACTTCTTATCCATTATCAAGCACACTCCCAATGAGGGTGGTAATCCATGGGCATCATCCAAATGAAAATACAACAGACAGCAGTACAATGGGAAAAGTGATACATTTGACCGACTCGATAGAGGACCTTTTGGAATTAGCAGAGAAAAAGTTTGGCAAAAGGGGAAACACAATTCTCATGGCAAACGGCTCACAAGTGGAAGAATTGAATGCTCTAAGAGAGAACGACCACTTGTATATCTTTTGA 1896 42.04 MSSETRSPLPLLLRRHTSSESKNLATVSSSLLPAFGTVIDEGYLQLKKYTIAPYDRRYRWWQTFLVILVIYSAWASPFELAFKKVATGSLMPVDLTVDAFFAADIILTFFVAYLDKSTYLLVDDHKKIAIRYATKLWLPMDIASTLPFQSMYRVITGKMHQGDIFGFLNLLRLWRLRRVSELFTRLEKDTRFSYFWTRYCKLICVTLFAVHSAGCFYYWLAIHHKTSKKTWIGAQITDFEHRSIWLGYTYSIYWSIVTLTTVGYGDLHAENTGEKVFNILYMLFNIGLTAYLIGNMTNLIVHSAIRTFAMRDAINEILRYASKNRLPEGLKEQMLAHMQLKFKTAELQQEEVLEDLPKAIRSSIAQHLFHKTVEKAYLFKGISDDLVTQLVSEIKAEYFPPKVDIILQNEIPTDFYIIAAGAMDVLIYKNGTEQFLTKQGPAEMAGEIGVIFNIPQPFTVRTKRLSQVIRISHHHFKQIVQQQNEDGKTIILNFVQYLRSLKQELQQEIPFLTELLGDMNIEHVESSQEPQNTETLRSDNDEGAHIEGTPTSYPLSSTLPMRVVIHGHHPNENTTDSSTMGKVIHLTDSIEDLLELAEKKFGKRGNTILMANGSQVEELNALRENDHLYIF* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3875332 3885838 - Vvi4g392 Vvi4g392 785171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g392 631 SUPERFAMILY Voltage-gated potassium channels 53 301 - -
Vvi4g392 631 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Vvi4g392 631 Pfam Ion transport protein 58 301 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi4g392 631 PANTHER POTASSIUM CHANNEL AKT1 2 59 IPR045319 GO:0005249|GO:0006813
Vvi4g392 631 PANTHER POTASSIUM CHANNEL AKT1 59 630 IPR045319 GO:0005249|GO:0006813
Vvi4g392 631 ProSiteProfiles KHA domain profile. 562 631 IPR021789 -
Vvi4g392 631 PRINTS EAG/ELK/ERG potassium channel family signature 94 104 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g392 631 PRINTS EAG/ELK/ERG potassium channel family signature 105 114 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g392 631 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g392 631 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g392 631 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g392 631 CDD CAP_ED 378 491 IPR000595 -
Vvi4g392 631 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Vvi4g392 631 Pfam KHA, dimerisation domain of potassium ion channel 562 630 IPR021789 -
Vvi4g392 631 Gene3D Jelly Rolls 343 509 IPR014710 -
Vvi4g392 631 SMART cnmp_10 378 495 IPR000595 -
Vvi4g392 631 Gene3D - 60 302 - -
Vvi4g392 631 MobiDBLite consensus disorder prediction 525 552 - -
Vvi4g392 631 SUPERFAMILY cAMP-binding domain-like 307 499 IPR018490 -
Vvi4g392 631 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 59 630 - -
Vvi4g392 631 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 2 59 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g392 K21867 - vvi:100242379 1254.97