Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g40 ATGGGAAGCAGAGCTCTGCTTCTGCTAAAAGCAACAACGGCAGAGACTCTTCTCTTCACTTCCAAAAGCACTTTTTCCAAAGCGCTTATTCGAAATTCAACCCGAAGCTTTTCAACCCGATCCGCTCTTCTCCCTCCGGACCTGCCTCGTCTGGCTGAAACTGCTCGCATCTCTCTCACCCCACACGAGGTTGAGGAATTTGCTCCGAAAATTCGACAAGTGATAGACTGGTTTGGGCAACTTCAAGCTGTTGATCTTCAGAGTATTGAGCCGTCAATCAGAGCAGATACTGAAGGTGACAATTTGCGTGATGATTCTCCTGAAACATTTGAGAATAGGGAGGCAATAATAGCTGCTATCCCAAGCTATGAGGAGCCATATCTCAAAGTTCCCAAGGTCTTAAACAAGGACTAA 414 46.38 MGSRALLLLKATTAETLLFTSKSTFSKALIRNSTRSFSTRSALLPPDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFENREAIIAAIPSYEEPYLKVPKVLNKD* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 498014 503312 + Vvi4g40 Vvi4g40 784819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g40 137 SUPERFAMILY Glu-tRNAGln amidotransferase C subunit 47 133 IPR036113 GO:0006450
Vvi4g40 137 Gene3D - 47 85 - -
Vvi4g40 137 PANTHER UNCHARACTERIZED 34 137 IPR003837 GO:0006450
Vvi4g40 137 TIGRFAM gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 47 134 IPR003837 GO:0006450
Vvi4g40 137 Pfam Glu-tRNAGln amidotransferase C subunit 59 130 IPR003837 GO:0006450
Vvi4g40 137 Hamap Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 42 135 IPR003837 GO:0006450
Vvi4g40 137 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, CHLOROPLASTIC/MITOCHONDRIAL 34 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g40 K02435 gatC, GATC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] - vvi:100249085 259.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g40 . . . . . . . . . . Cma01g01446 . Car09g00550 . . . . . . . . . . . . . . . . . . . . . . . Csa03g04534 Chy04g00169 . . . . . . . . . Sed05g1519 Cmo01g01500 . Cma09g00621 . . . . Cpe02g00502 Bhi09g02555 Tan01g3902 Cmetu04g3181 . . . . . . . . . . . . . . Cme04g00195
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008706 0 2 0 1 1 0 2 1 1 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 0 1 4 2 1 33