Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g400 ATGAAAAGATGTAGTGGTCAACAAAATATGGCATTGCGAGATCCGATCATTTGTGGAGTGTGGCTGTCTGTTGTGCCGGATTGGTTTATGACGAGGATGAGCATTCATGACAGTTGTCATGGATGGATCTATGTGTTAGAAATGAAGCTCAGGGCCTTGAAAATCAGAGAAATGGAAGATATGTTTGTACCCATCTTGAAAGACTGCCCCAACATAGTAGAATTGAAGAAAATCCATGCCCACATTGTCAAGTTTTCACTCTCACAAAGTAGCTTTTTGGTGACAAAAATGGTGGACGTGTGTAATCACTATGGAGAAACAGAGTATGCAAATTTGTTATTCAAAGGAGTGGCTGACCCAAATGCTTTCTTGTACAATGCAATGATCAGAGCTTATAAGCATAACAAAGTTTACGTCCTAGCAATCACTGTTTACAAGCAAATGCTTGGAAACCCCCATGGTGAAAACCCCATTTTTCCTGACAAATTCACCTTCCCATTTGTTGTTAAATCATGTGCAGGGCTTATGTGTTATGATCTGGGAAAGCAAGTTCATGGGCATGTGTTCAAATTTGGGCAAAAGTCCAATACAGTCGTTGAAAATTCACTTGTGGAAATGTATGTAAAATGTGATAGCTTGGATGATGCCCACAGGGTGTTTGAGGAAATGACTGAAAGAGATGCAACCATTTTTTCTTGGACAGCTATCGTTTCCGGGTATGCTCGAATTGGGTGCTATGCAGATGCATTGGAATTTTTCCGGAGAATGCAAATGGTCGGTATTGAGCCGGATGAGATCAGTCTTGTTTCTGTTTTACCAGATTGTGCCCAGCTAGGAGCTCTTGAGTTAGGGAAATGGATACATATTTATGCAGATAAAGCCGGGTTTTTGCGCAACATTTGTGTTTGTAATGCTTTGATCGAAATGTATGCAAAATGTGGAAGTATAGATCAAGGGCGTCGCTTGTTTGATCAGATGAAAGAGAGGGATGTGATATCTTGGAGTACAATGATCGTAGGGCTAGCAAATCATGGAAGAGCTCGTGAAGCTATTGAATTGTTTCAAGAAATGCAGAAGGCAAAGATTGAACCCAGCATCATCACCTTTGTCGGTCTTTTAACAGCTTGTGCCCATGCTGGCCTTTTGAATGAGGGATTGAGGTACTTCGAGTCCATGAAAAGGGATTACAATATAGAACCAGGGGTTGAGCATTATGGTTGTTTGGTCAATCTTCTTGGTCTTTCTGGACGCCTTGATCAGGCTCTTGAACTCGTAAAGAAGATGCCAAGGAAGCCGGATTCACCCATTTGGGGTTCGTTATTGAGTTCCTGCAGAAGTCACGGCAATCTCAAGATTGCAGTCATTGCAATGGAGCATCTGCTAGAGCTTGAACCAGCCGATACAGGGAACTATGTCTTGCTTTCAAATCTTTATGCAGACTTGGGAAAGTGGGATGGTGTATCGAGGATGAGGAAACTCATGAGAAGTAAGAGCATGAAGAAGACACCAGGGTGCAGTTCAATTGAGGTGGACAATATGGTTCAAGAATTTGCATCAGGTGATGATTCAAAACCATTTTCCAAAGCTATATGTAGGGTACTAAAGCTGCTGGTTATGCATCAGAGCAAAATCATCGAAATTATGGTTCATGACATAAGCTAA 1662 41.64 MKRCSGQQNMALRDPIICGVWLSVVPDWFMTRMSIHDSCHGWIYVLEMKLRALKIREMEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSKIIEIMVHDIS* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4058297 4065804 - Vvi4g400 Vvi4g400 785179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g400 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Vvi4g400 553 PANTHER OS05G0439300 PROTEIN 55 228 - -
Vvi4g400 553 PANTHER OS05G0439300 PROTEIN 227 552 - -
Vvi4g400 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vvi4g400 553 Pfam E motif 447 509 IPR046848 -
Vvi4g400 553 SUPERFAMILY TPR-like 207 487 IPR011990 GO:0005515
Vvi4g400 553 Gene3D Tetratricopeptide repeat domain 283 383 IPR011990 GO:0005515
Vvi4g400 553 Gene3D Tetratricopeptide repeat domain 184 282 IPR011990 GO:0005515
Vvi4g400 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Vvi4g400 553 Pfam PPR repeat 201 226 IPR002885 -
Vvi4g400 553 Pfam PPR repeat 231 261 IPR002885 -
Vvi4g400 553 Pfam PPR repeat 404 431 IPR002885 -
Vvi4g400 553 Pfam PPR repeat 124 150 IPR002885 -
Vvi4g400 553 Gene3D Tetratricopeptide repeat domain 44 183 IPR011990 GO:0005515
Vvi4g400 553 Gene3D Tetratricopeptide repeat domain 384 530 IPR011990 GO:0005515
Vvi4g400 553 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Vvi4g400 553 TIGRFAM PPR: pentatricopeptide repeat domain 302 331 IPR002885 -
Vvi4g400 553 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Vvi4g400 553 TIGRFAM PPR: pentatricopeptide repeat domain 201 227 IPR002885 -
Vvi4g400 553 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Vvi4g400 553 TIGRFAM PPR: pentatricopeptide repeat domain 124 149 IPR002885 -
Vvi4g400 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 55 228 - -
Vvi4g400 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 227 552 - -
Vvi4g400 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vvi4g400 553 Pfam PPR repeat family 329 377 IPR002885 -
Vvi4g400 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 329 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g400 - - - vvi:100260991 979.163
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g400 . . . . Bpe02g01199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01329 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019465 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4