Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g407 ATGGCCACAGCAGTGACCGAGCTCAGTCAGTCTGGTCCAGCCATGGTCGGGGAGGTCTGCACCGCCAAAACGACGTCGTCTAAGCAAGGAGATGGGCTGAGGCAGTACTACCTCCAACACATCCACGATCTCCAGCTACAGGTTCGCCAGAAGAGCCATAATCTCAATCGCCTTGAAGCCCAGCGCAACGATCTCAATTCCCGAGTGAGGATGCTCAGAGAAGAATTGCAGCTGCTTCAAGAGCCTGGATCATATGTTGGTGAAGTAGTCAAAGTTATGGGAAAATCGAAGGTTTTGGTTAAGGTTCATCCAGAAGGGAAGTATGTTGTTGATATTGATAAGAACATAGACATCACTAAGATCACACCTTCAACCCGAGTTGCTCTTCGCAATGACAGCTATGTGCTTCACTTGATATTGCCCAGTAAAGTAGATCCACTGGTAAACCTTATGAAAGTTGAAAAAGTTCCGGATTCTACATATGATATGATTGGTGGTCTTGATCAGCAAATCAAAGAGATAAAGGAGGTTATTGAGCTTCCAATCAAGCATCCTGAATTATTTGAAAGTCTTGGTATAGCTCAACCAAAGGGAGTCCTGCTTTATGGTCCTCCTGGTACAGGGAAAACACTTCTTGCAAGGGCAGTGGCTCATCACACTGACTGTACCTTTATAAGGGTTTCTGGCTCTGAGTTAGTTCAGAAGTATATTGGTGAAGGGTCTCGAATGGTTAGAGAACTGTTTGTTATGGCAAGGGAGCATGCTCCATCAATCATCTTCATGGATGAAATTGACAGTATTGGATCTGCTCGAATGGAATCTGGAACTGGAAATGGTGATAGTGAAGTGCAGCGAACTATGTTGGAGCTTCTCAATCAACTGGATGGATTTGAAGCCTCAAACAAGATCAAGGTTTTGATGGCTACAAATCGCATTGATATTTTGGATCAAGCCCTCCTTAGGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTGCAGAGCTTAAGGCGGTATGCACAGAAGCTGGAATGTTTGCTCTAAGGGAGAGGAGAGTACATGTGACACAAGAAGATTTTGAGATGGCAGTGGCAAAGGTGATGAAAAAGGAGACAGAGAAAAACATGTCCTTGCGGAAGCTGTGGAAGTAA 1263 44.42 MATAVTELSQSGPAMVGEVCTAKTTSSKQGDGLRQYYLQHIHDLQLQVRQKSHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4133939 4146561 - Vvi4g407 Vvi4g407 785186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g407 420 Pfam AAA+ lid domain 356 398 IPR041569 -
Vvi4g407 420 Pfam ATPase family associated with various cellular activities (AAA) 199 332 IPR003959 GO:0005524|GO:0016887
Vvi4g407 420 ProSitePatterns AAA-protein family signature. 303 321 IPR003960 GO:0005524|GO:0016887
Vvi4g407 420 Gene3D - 48 151 IPR012340 -
Vvi4g407 420 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 43 405 IPR005937 GO:0005737|GO:0030163|GO:0036402
Vvi4g407 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 409 IPR027417 -
Vvi4g407 420 PANTHER BNAA02G04630D PROTEIN 18 417 IPR035261 GO:0036402
Vvi4g407 420 Gene3D - 152 333 IPR027417 -
Vvi4g407 420 Pfam Proteasomal ATPase OB C-terminal domain 86 141 IPR032501 -
Vvi4g407 420 Coils Coil 41 75 - -
Vvi4g407 420 SMART AAA_5 195 335 IPR003593 -
Vvi4g407 420 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 417 - -
Vvi4g407 420 Gene3D - 338 415 - -
Vvi4g407 420 CDD AAA 165 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g407 K03066 PSMC5, RPT6; 26S proteasome regulatory subunit T6 - vvi:100254376 805.823
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g407 . . . . . . . . Cmo05g00705 . . Cma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00597 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001659 4 2 3 2 3 2 3 2 2 2 2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 2 2 1 1 2 64