Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g408 ATGTCAGGAAAAGGTGCTAAAGGTCTGATTATGGGGAAATCCCCAGCACTCAACAAGGACAAGGACAAGAAGAAGCCCGTTTCTCGTTCCTCTCGTGCTGGTCTCCAGTTCCCAGTTGGCCGCATCCACCGACTTCTGAAGTCAAGGGTCACAGCAAATGGAAGAGTTGGAGCAACAGCAGCTGTGTACTCAGCAGCCATCTTAGAGTATCTAACAGCAGAAGTATTGGAGCTGGCCGGTAACGCAAGCAAGGATCTGAAGGTGAAACGTATCACACCCAGGCATTTGCAGCTTGCAATTAGGGGAGATGAAGAACTTGACACCCTAATTAAAGGAACCATAGCTGGTGGTGGTGTGATTCCTCACATTCACAAATCTCTCATCAACAAATCCTCCAAGGACTGA 405 48.4 MSGKGAKGLIMGKSPALNKDKDKKKPVSRSSRAGLQFPVGRIHRLLKSRVTANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKD* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4149580 4155798 + Vvi4g408 Vvi4g408 785187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g408 134 MobiDBLite consensus disorder prediction 1 35 - -
Vvi4g408 134 PANTHER HISTONE H2A 2 133 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 SUPERFAMILY Histone-fold 4 111 IPR009072 GO:0046982
Vvi4g408 134 Pfam C-terminus of histone H2A 104 133 IPR032454 -
Vvi4g408 134 PRINTS Histone H2A signature 25 47 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 PRINTS Histone H2A signature 55 70 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 PRINTS Histone H2A signature 70 83 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 PRINTS Histone H2A signature 84 98 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 PRINTS Histone H2A signature 111 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 CDD H2A 18 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 SMART h2a4 15 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g408 134 ProSitePatterns Histone H2A signature. 33 39 IPR032458 -
Vvi4g408 134 PANTHER HISTONE H2A 2 133 - -
Vvi4g408 134 Pfam Core histone H2A/H2B/H3/H4 18 102 IPR007125 GO:0003677
Vvi4g408 134 Gene3D Histone, subunit A 15 134 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g408 K11251 H2A; histone H2A - vvi:100249276 259.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g408 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001413 3 3 2 4 3 2 3 2 2 2 2 2 4 2 2 2 2 6 2 2 2 2 2 2 1 2 2 3 2 2 72