Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g413 ATGGCGAGGGAGAGTGAGAAGCAGCCCAAGCCCAAGGCGATAATTGTAGGGGGCAGCATAGCTGGGGTGTCCTGCGCACACGCCCTCACGTTAGCAGGCTGGAACGTGGTGGTGCTCGAGAAAACCTGCGCACCCCCCACCGGAAGCCCCACCGGCGCCGGACTCGGACTCGACCCTCTGGCTCAGAGACTCATCGAGTCATGGGTGGGTGACCCAGATTCTCTCCGCAAAGCCACCGTACCCCTCACCATTGATCAAAACCAAGCAATCGATGGTAAGAAGATCAGGGGCACGCTTACAAGAGACGAGAACTTGAATTTCAGAGCAGCGCATTGGGCTGATCTCGATGGCCTTTTGTATAATGCATTAGCTGAGGACGTTTTCCTCTGGGGTCACCTCTTCCTCTCTTTCAGCATTTCTGATGATAAATCTTGTGTGAAAGTAAAGAGCAAAGTTCTTGAAACAGGGGAAATCATAGAAACAGTTGGGGATTTGCTCGTTGCTGCCGACGGGTGTCTCTCTGCAATTCGGGAGCATTTTCTTCCTGACCTTCAGTTGAGGTACTCAGGTTATTGTGCGTGGAGAGGAGTTCTTGATTTTTCAGAGAATGAGAACTCAGAAACCATACAAGGCATGCGAAGGGCGTATCCGGATCTGGGAAAATGTTTATACTTCGATCTTGGATCAGGAACTCACAGTGGGATTTATGAGCTTCTAAACAAAAGGATCAATTGGTTATGGTATGTCAACCAACCCCAGCCAGAAATGAAGGGGAAGTCAGTGACCATGAAAGTCAGCAGCGACATGATCGAGAAGATGCACCAAGAAGCAGAGATGGCTTGGGCGCCTGAATTGGTGAGAGTCATGAAAGAAACGAAGGAGCCTTTCCTGAATGCCATATATGATTGTGACCCTTTAGAACAAATCTTTTGGGACAATGTGGTATTGATTGGAGATGCAGCTCACCCCACAACACCTCACGGCCTGAGAAGCACAAATATGTCGGTATTGGATGCAGCAGTTTTAGGTAAATGCCTTGAGAAGTGGGGAGTGGAAAATTTAAGTTCAGCTCTTGAAGAATATCAGTCTACTCGGCTACCAGTCACTTCAAAGCAAGTCCTCCATGCACGCCGATTGGGTCGCTTGAAACAAGGTCTGATCCTTGCTGATCGCAAGCCTTTTGATCCAAAAACAGCGAGTCTGGAGGACTGTGCATTTGGTACATTGGAATAG 1233 48.91 MARESEKQPKPKAIIVGGSIAGVSCAHALTLAGWNVVVLEKTCAPPTGSPTGAGLGLDPLAQRLIESWVGDPDSLRKATVPLTIDQNQAIDGKKIRGTLTRDENLNFRAAHWADLDGLLYNALAEDVFLWGHLFLSFSISDDKSCVKVKSKVLETGEIIETVGDLLVAADGCLSAIREHFLPDLQLRYSGYCAWRGVLDFSENENSETIQGMRRAYPDLGKCLYFDLGSGTHSGIYELLNKRINWLWYVNQPQPEMKGKSVTMKVSSDMIEKMHQEAEMAWAPELVRVMKETKEPFLNAIYDCDPLEQIFWDNVVLIGDAAHPTTPHGLRSTNMSVLDAAVLGKCLEKWGVENLSSALEEYQSTRLPVTSKQVLHARRLGRLKQGLILADRKPFDPKTASLEDCAFGTLE* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4190724 4193303 + Vvi4g413 Vvi4g413 785192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g413 410 Gene3D - 12 391 IPR036188 -
Vvi4g413 410 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 - -
Vvi4g413 410 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 162 177 - -
Vvi4g413 410 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 326 - -
Vvi4g413 410 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 342 - -
Vvi4g413 410 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 361 377 - -
Vvi4g413 410 PANTHER MONOOXYGENASE-LIKE 9 404 - -
Vvi4g413 410 SUPERFAMILY FAD/NAD(P)-binding domain 11 384 IPR036188 -
Vvi4g413 410 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Vvi4g413 410 Pfam FAD binding domain 13 372 IPR002938 GO:0071949
Vvi4g413 410 SUPERFAMILY FAD-linked reductases, C-terminal domain 187 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g413 - - - vvi:100244005 813.527
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002690 0 4 0 0 0 4 1 3 4 2 3 3 2 2 3 1 3 1 1 3 2 1 2 2 1 4 1 2 2 1 58