Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g416 ATGGAGGACAGGAAGGATGTTATCAATGGCGGAGAAAATGGGAGCTCGAGTGAGGGTCGGCCACCGAACCCGATTTCGTCGGCGTATCGGCAGTGTTTCGGCAGTGCCAAGGTCAACGCGCCATGTAAGAAGTCCTTGGTTCGGCACCCATCTCTGCTGAAGATGAAGACAACAGAAAATTCTGTTGAATCAGGACTGAGTGTAGAAGATCATGAGACTGATTTCATTCCAATTGTTCGTTCTGGAGCATGGACGGACGTTGGGTTTCGAAAAAGCATGGAGGACGTGTATGTTTGTGTTGACAATTTTACAAGCGAATATGGGTTCAAGAATTTGAACGAAGAGCCTAATGCCTTCTATGGGGTTTTTGATGGTCATGGAGGAAAGCATGCTGCGGATTTTGTTTGCTACCATCTGCCAAGGTTCATTGTTGAGGATGAAGACTTTCCAAGGGAGATTGAGAGGGTTGTTGCTTCTGCTTTTCTGCAAACAGACAATGCTTTTGCAGAAGCTTGCTCCTTAGATGCCGCCCTTGCTTCTGGTACCACCGCATTGGCAGCTCTTGTCGTTGGAAGGTCATTGGTGGTGGCTAATGCTGGAGATTGTCGTGCAGTACTCTGTCGGCGTGGCAAGGCAATTGAAATGTCAAGGGACCACAAACCAGTTTGCTCCAAGGAAAAGAAGCGCATTGAAGCATGTGGAGGCTATGTCTATGATGGCTACCTCAATGGACAACTCAATGTTGCTCGAGCTTTAGGAGACTGGCACATGGAAGGACTGAAGGATGTGGATGGTGGACCCCTGAGTGCAGAGCCTGAGTTCATGACAACAAGACTTACTGAAGAAGATGAATTCCTCATCATAGGTTGTGATGGGATCTGGGATGTCTTTAGAAGCCAGAATGCTGTGGATTTTGCCAGGAGAAGACTTCAGGAACACAACGACCCGGCCTTGTGTAGCAAGGATCTAGTTGATGAGGCTTTAAAGAGAAAGAGTGGAGACAATCTGGCTGCTGTTGTGGTGTGCTTCCAACCCCAGGCCCCCCCTAACTTGGTTGCCCCACGACCAAGGGTGCAAAGGAGCATTTCTGCAGAGGGTTTGAGGGAGTTGCAGAGCTTCTTGGATGGCTTGGGAAAAGACTAG 1143 48.73 MEDRKDVINGGENGSSSEGRPPNPISSAYRQCFGSAKVNAPCKKSLVRHPSLLKMKTTENSVESGLSVEDHETDFIPIVRSGAWTDVGFRKSMEDVYVCVDNFTSEYGFKNLNEEPNAFYGVFDGHGGKHAADFVCYHLPRFIVEDEDFPREIERVVASAFLQTDNAFAEACSLDAALASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEACGGYVYDGYLNGQLNVARALGDWHMEGLKDVDGGPLSAEPEFMTTRLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPALCSKDLVDEALKRKSGDNLAAVVVCFQPQAPPNLVAPRPRVQRSISAEGLRELQSFLDGLGKD* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4215068 4225087 + Vvi4g416 Vvi4g416 785195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g416 380 Gene3D - 56 347 IPR036457 -
Vvi4g416 380 MobiDBLite consensus disorder prediction 10 26 - -
Vvi4g416 380 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 57 364 - -
Vvi4g416 380 MobiDBLite consensus disorder prediction 1 26 - -
Vvi4g416 380 Pfam Protein phosphatase 2C 88 335 IPR001932 -
Vvi4g416 380 PANTHER PROTEIN PHOSPHATASE 2C 57 364 IPR015655 GO:0004722|GO:0006470
Vvi4g416 380 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Vvi4g416 380 CDD PP2Cc 79 343 IPR001932 -
Vvi4g416 380 ProSiteProfiles PPM-type phosphatase domain profile. 80 343 IPR001932 -
Vvi4g416 380 SUPERFAMILY PP2C-like 74 344 IPR036457 -
Vvi4g416 380 SMART PP2C_4 76 341 IPR001932 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14747 PF00481 PP2C 5.40E-70 CL0238 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g416 K14803 - vvi:100256157 758.829