Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g417 ATGGAGAGTAGCGATGTGTACAGAGTCAACAGTGCACGTCTGAGCAGTTCTAACATATGGAGGAACAGTGGCATGGAAGTTTTCTCAAGGTCTTCTCGAGATGAAGACGATGAAGAAGCACTTAAATGGGCTGCTATAGAGAAACTTCCAACATATCTACGTATAAGGAGGGGCATACTTGCTGAAGAAGAGGGTAAAGCAAGAGAAATTGACATAACAAGTCTTGGGTTGATTGAGAAAAAGAATTTGTTAGAGAGGCTTGTGAAAATAGCAGAGGAAGATAATGAGAAGTTCTTGTTAAAACTCAAGGAGCGCATTGATCGAGTTGGACTTGATATTCCAACCATTGAAGTTCGGTTTGAGCATATAACAGTGGATGCAGAAGCATATATAGGAGGCAGAGCACTACCTACAATAATCAATTTCTCTGCTAATATGTTAGAGGGGTTCTTGAATTATCTTCACATTCTTCCAAGTAGAAAAAAACCACTACCAATCCTCCATGATGTTAGTGGAATCATCAAGCCTGGCAGGATGACACTACTCTTAGGCCCGCCAAGTTCTGGAAAGACTACATTGTTATTGACATTGGCAGGAAAACTTGGCTCAGATCTGAAACTTTCAGGGAGAGTTTCCTACAATGGCCATGGGATGGATGAGTTTGTTCCACAGAGGAGTTCAGCTTACATAAGTCAATATGATCTCCATATAGGAGAAATGACTGTCAGAGAAACATTAGCTTTCTCAGCAAGATGTCAAGGTGTTGGAACCGGTTATGATATGTTAGCAGAATTATCAAGAAGAGAGAAGGTGGCAAACATTAAGCCTGATCCAGATATTGATATTTATATGAAGGCAGCAGCACTAAAAGGGCAGGGGGGCAGTTTAATTACAGACTATATTCTCAAGATCTTGGGACTTGAAGTCTGTGCTGATACTATAGTAGGGGATGAAATGGTACGAGGCATCTCTGGCGGGCAAAAAAGGCGACTCACAACAGGAGAGATGCTGGTTGGACCGGCTAAAGCACTTTTCATGGATGAGATATCAACTGGTTTGGACAGTTCAACTACTTTTCAGATTGTAAATTCAATCAGGCAGTCCATCCACATCCTCAAGGGAACTGCTATTATCTCCCTCCTCCAGCCAGCACCAGAAACCTATGACCTATTCGATGATATAATTCTCCTTTCTGATGGGCAAATTGTGTATCAAGGTCCCCGTGAAAATGTGCTAGAGTTCTTTGAACACATGGGTTTCAAATGTCCCGAGAGAAAAGGAGTGGCTGACTTCTTACAAGAAGTGACATCAAAGAAGGATCAAGAGCAGTATTGGGCTCATAGAGGTGAACCTTATAGTTTTGTTACCGTCACAGAATTTTCTGAAGCATTTCAATCGTTTCATGTTGGTCGGAGGCTAGGTGATGAACTTGCTATTCCGTTTGACAAGGCCAAGGCCCACACCGCTGCTTTAACGACTAAGAAGTATGGTGTTAGCAAGAAGGAACTATTGAAAGCTTGCATATCAAGAGAACTCTTGCTTATGAAAAGGAACTCATTTGTTTACATTTTCAAAATGAGCCAACTTATTCTTCTCGCTTTTATAATGATGACATTATTTCTAAGAACCGATATGCCACGGAAAACGATAGCAGATGGCTGGATTTTTTTGGGTTCTATGTTCTTCACGTTGATGATGATCATGTTTAATGGATTTTCAGAGCTTGCCCTGACAATCATGAAACTTCCAGTCTTTTACAAACAAAGGGACCTACTTTTCTATCCTTCATGGGCATACTCTCTACCCACATGGATTCTCAAGATCCCAATCACACTTGTAGAAGTGGCCATTTGGGTGTTCATGACTTATTATGTTGTTGGCTTTGATCCAAACATTGAAAGGTTTTTCAGACAGTACTTGTTACTCCTATGTGTTAACCAGATGGCATCAGGACTTCTTCGACTCATGGCAGCACTAGGAAGGAACATCATAGTCGCAAATACATTTGGCTCATTTGCGTTACTTGCAGTTTTAGTTATGGGAGGATTCGTCTTATCAAAAGATGATGTAAAGCCGTGGTGGATGTGGGGTTATTGGATTTCACCTATGATGTACGGGCAGAATGCCATAGCTGTGAACGAATTCCTTGGGAAGAGTTGGAGACATGTTCCTGAAAATGCAACAGAACCGTTAGGTGTTTTAGTCTTGAAATCTCGAGGAATCTTCCCAGAGGCATATTGGTATTGGCTGGGAGTAGGAGCTTTGATCGGATATGTTTTCCTATTCAATTTCCTATTCACTGTGGCCCTAGCTTATCTCAATCCATATGGGAAGCATCAGACAGTTCTATCTGAAGAGACCCTAACCGAGCAATCATCAAGAGGAACAAGCTGTACTGGAGGAGACAAAATTCGAAGTGGATCATCCAGATCATTGTCTGCAAGAGTGGGGTCCTTTAACAATGCTGATCAAAACAGGAAGAGGGGAATGATTCTTCCTTTTGAACCTCTTTCCATTACTTTTGATGAAATCCGATATGCAGTAGATATGCCACAGGAAATGAAATCACAAGGCATCCCTGAGAACCGACTAGAACTTTTGAAAGGCGTGAGCGGTTCTTTTAGGCCAGGAGTCCTTACGGCTTTAATGGGTGTTAGTGGTGCTGGCAAAACCACTCTAATGGATGTATTGGCTGGCCGGAAAACTGGTGGATATATTGATGGAAGCATCAAGATATCTGGTTACCCAAAGAATCAAAAGACATTTGCTCGCATATCAGGATATTGCGAGCAAACTGATATCCACTCTCCTCATGTTACAGTCTATGAGTCCTTGCTTTATTCTGCATGGCTTCGGTTACCTCCTGAAGTTGATTCTGCAACCAGAAAGATGTTCATTGAAGAGGTAATGGAGCTTGTGGAACTGAATTCATTGAGGCAAGCACTAGTTGGATTGCCAGGTGTGGATGGTCTCTCAACCGAGCAGCGCAAGAGGCTGACCGTTGCAGTCGAGCTTGTAGCAAACCCATCTATAATATTCATGGATGAACCAACCTCTGGGCTTGATGCCAGGGCAGCAGCAATAGTGATGAGAACAGTGAGGAACACAGTGGACACAGGACGAACTGTGGTGTGCACTATCCACCAGCCAAGCATTGATATATTTGATGCTTTTGATGAGCTATTTCTTTTGAAACGAGGAGGAGAAGAAATATATGCAGGCCCATTAGGCCACCATTCTGCACATCTGATTAAGTACTTTGAGGGAATTGATGGAGTCAGTAAGATAAAAGATGGTTACAATCCGGCAACTTGGATGTTGGAAGTGACTTCAGCAGCACAAGAAGCAGCTCTAGGCATTAACTTCACCGATGTGTACAAGAACTCTGAACTATATAGGAGAAACAAAGCATTGATCAAGGAACTCAGTACACCTCCTCCGGGTTCAAAAGATCTTTACTTCCCTACTCAATATTCACAATCTTTCTTCGCACAATGTAAGACTTGCTTATGGAAGCAACATTGGTCATATTGGCGAAACCCATCATACACAGCAGTGAGACTCTTATTCACAACTTTCATAGCTTTAATGTTTGGCACGATATTCTGGGATCTTGGCTCTAGAAGGCAAAGGAAACAGGATCTCTTCAATGCAATGGGTTCCATGTATTGTGCTGTTCTCTTTATTGGGGCACAAAATGCCACATCGGTGCAGCCTGTTGTGGCCATTGAGAGAACAGTCTTTTACAGAGAAAAAGCTGCTGGAATGTATTCAGCTTTGCCATATGCCTTTGGACAGGTCATGATTGAGCTCCCATACATACTCATTCAGACAATCATCTATGGAGTTATAGTGTATGCCATGATTGGTTTTGACTGGACCATGACCAAGTTCTTTTGGTATATCTTTTTCATGTACTTCACCTTCTTATACTTCACTTTCTACGGAATGATGGCCGTGGCTGTCTCTCCAAACCACAACATTGCCGCCATAATTTCCTCTGCCTTCTATGCAATATGGAACCTTTTCTCAGGATTTATTGTTCCACGAACAAGAATTCCTGTGTGGTGGAGATGGTACTATTGGTGTTGCCCCATCTCTTGGACTTTGTATGGATTGATTGGTTCACAATTTGGAGACATGAAGGACAAACTAGATACAGGTGAAACAATAGAAGACTTCGTAAGGAGTTACTTTGGGTTTAGAAATGACTTTCTGGGAATTGTTGCAGTTGTTATAGTAGGGATAACTGTGCTGTTTGGATTCACCTTTGCCTATTCAATAAGGGCATTCAACTTCCAAAAAAGATAA 4311 41.94 MESSDVYRVNSARLSSSNIWRNSGMEVFSRSSRDEDDEEALKWAAIEKLPTYLRIRRGILAEEEGKAREIDITSLGLIEKKNLLERLVKIAEEDNEKFLLKLKERIDRVGLDIPTIEVRFEHITVDAEAYIGGRALPTIINFSANMLEGFLNYLHILPSRKKPLPILHDVSGIIKPGRMTLLLGPPSSGKTTLLLTLAGKLGSDLKLSGRVSYNGHGMDEFVPQRSSAYISQYDLHIGEMTVRETLAFSARCQGVGTGYDMLAELSRREKVANIKPDPDIDIYMKAAALKGQGGSLITDYILKILGLEVCADTIVGDEMVRGISGGQKRRLTTGEMLVGPAKALFMDEISTGLDSSTTFQIVNSIRQSIHILKGTAIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWAHRGEPYSFVTVTEFSEAFQSFHVGRRLGDELAIPFDKAKAHTAALTTKKYGVSKKELLKACISRELLLMKRNSFVYIFKMSQLILLAFIMMTLFLRTDMPRKTIADGWIFLGSMFFTLMMIMFNGFSELALTIMKLPVFYKQRDLLFYPSWAYSLPTWILKIPITLVEVAIWVFMTYYVVGFDPNIERFFRQYLLLLCVNQMASGLLRLMAALGRNIIVANTFGSFALLAVLVMGGFVLSKDDVKPWWMWGYWISPMMYGQNAIAVNEFLGKSWRHVPENATEPLGVLVLKSRGIFPEAYWYWLGVGALIGYVFLFNFLFTVALAYLNPYGKHQTVLSEETLTEQSSRGTSCTGGDKIRSGSSRSLSARVGSFNNADQNRKRGMILPFEPLSITFDEIRYAVDMPQEMKSQGIPENRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKNQKTFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEVDSATRKMFIEEVMELVELNSLRQALVGLPGVDGLSTEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGEEIYAGPLGHHSAHLIKYFEGIDGVSKIKDGYNPATWMLEVTSAAQEAALGINFTDVYKNSELYRRNKALIKELSTPPPGSKDLYFPTQYSQSFFAQCKTCLWKQHWSYWRNPSYTAVRLLFTTFIALMFGTIFWDLGSRRQRKQDLFNAMGSMYCAVLFIGAQNATSVQPVVAIERTVFYREKAAGMYSALPYAFGQVMIELPYILIQTIIYGVIVYAMIGFDWTMTKFFWYIFFMYFTFLYFTFYGMMAVAVSPNHNIAAIISSAFYAIWNLFSGFIVPRTRIPVWWRWYYWCCPISWTLYGLIGSQFGDMKDKLDTGETIEDFVRSYFGFRNDFLGIVAVVIVGITVLFGFTFAYSIRAFNFQKR* 1437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4227018 4234518 - Vvi4g417 Vvi4g417 785196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g417 1436 Pfam ABC-transporter N-terminal 85 142 IPR029481 -
Vvi4g417 1436 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 839 1091 IPR003439 GO:0005524
Vvi4g417 1436 Pfam Plant PDR ABC transporter associated 720 782 IPR013581 -
Vvi4g417 1436 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 1436 - -
Vvi4g417 1436 Gene3D - 854 1083 IPR027417 -
Vvi4g417 1436 SMART AAA_5 876 1068 IPR003593 -
Vvi4g417 1436 SMART AAA_5 176 408 IPR003593 -
Vvi4g417 1436 CDD ABCG_PDR_domain1 146 406 IPR034001 -
Vvi4g417 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 424 IPR027417 -
Vvi4g417 1436 Pfam ABC-2 type transporter 1165 1378 IPR013525 GO:0016020|GO:0140359
Vvi4g417 1436 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Vvi4g417 1436 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1436 - -
Vvi4g417 1436 MobiDBLite consensus disorder prediction 788 810 - -
Vvi4g417 1436 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Vvi4g417 1436 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Vvi4g417 1436 Pfam ABC transporter 867 1019 IPR003439 GO:0005524
Vvi4g417 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 863 1074 IPR027417 -
Vvi4g417 1436 CDD ABCG_PDR_domain2 836 1074 IPR034003 -
Vvi4g417 1436 Gene3D - 153 455 IPR027417 -
Vvi4g417 1436 Pfam ABC-2 type transporter 382 433 IPR043926 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g417 K08711 PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR - vvi:100250693 2794.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000210 5 7 7 8 5 5 5 4 4 5 4 4 6 5 5 6 4 7 6 3 5 6 5 7 7 5 6 9 8 14 177