Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g420 ATGTTGAAAAACACTTACCAGAATCAGTGTCAAACGCATTCTTATAGTGTCCATATTGAAGAGATCATCAGCTTAGCCAAGAATTCATTAACCAAACAGTCTGTACTGTGGAATAGGTTGGTGCCAATGGAGAGTAGTGATATTAGCAGAGTAACTAGTGTACGTATTACTGCTTCTAACATACTCAGGAACAGCTCTGTGGAAGTTTTCTCGAGGTCGTCTCGGGAAGAAGATGATGAAGAAGCCCTGAAATGGGCTGCTCTCGAGAAACTGCCTACATTCCTTCGTATACAGAGAGGCATCCTCACTGAAGAAAAGGGCCAGGCAAGGGAAATTGATATAAAGAGCCTTGGGTTGCGAGAGAGGAAGAATCTGATCCAGCGGCTTGTGAAGATCGATGGGCATGATAACGAGAAGTTCTTGTTGAAGCTCAAGGAGCGGATTGATCGAGTTGGACTTGATAGTCCAACGGTTGAAGTTCGATTCGAGCACTTAACAGTTGATGCAGAGGCTTATGTTGGAAGCAGAGCATTACCCACTATATTCAACATCTCAGCAAATATTTTGGAGGGGTTCTTGAATTATCTTCACATTCTTCCTAGTAGAAAGAAACCCTTCTCAATCCTCCATGATGTTAGTGGAATCATCAAACCTCGCAGAATGGCTTTGCTTCTAGGACCTCCAAGCTCTGGGAAGACTACACTGTTATTAGCTTTGGCAGGAAGACTTGGTTCAGATCTGAAAGTTTCGGGCCGAGTTACCTACAATGGCCATGGAATGGATGAGTTTGTTCCACAGAGGACTTCAGCTTATACAAGTCAATATGATCTTCATGCTGGAGAAATGACAGTGCGAGAAACATTGGATTTTTCAGCTAGATGTCAGGGGGGTGGAGGCCTTTCCGATATGTTAGCAGAATTATCAAGAAGAGAGAAGGCTGCAAACATTAAGCCTGATCCTGATATTGATATCTACATGAAGGCTGCAGCACTAGAAGGGCAGAAGACCAGTGTAGTCACAGAATATATGCTCAAGATTCTAGGACTTGAAATCTGCGCTGATACATTGGTGGGGGATGTAATGAAACGAGGCATATCCGGCGGACAAAAAAAGCGACTCACAACAGGGGAGATACTGGTTGGACCAGCCAGAGCACTTTTCATGGATGAGATATCAACTGGTTTGGATAGTTCAACAGCTTTTCAGATTGTAAATTCACTCAGGCAGTCCATCCATATGCTTAATGGAACTGCTCTTATCTCTCTCCTCCAACCAGCACCAGAAACATACAACCTATTTGATGATATAATTCTCCTCTCTGATGGAAAAATTGTGTATCAAGGTCCCTGTGAAAATGTGCTCGAGTTCTTTGGATACATGGGCTTCAAATGTCCAGAAAGGAAAGGAGTGGCTGACTTCTTACAAGAAGTGACATCAAGGAAGGATCAAGAGCAGTACTGGGCGCGTAAGGACGAGCCTTATAGCTATGTTACTGTCAAGGAATTCGCTGAAGCCTTTCAATCATTTCATATTGGTCAGAAACTAGGTGATGAGCTTGCTGTGCCATTCGATAAGACCAAAGGCCACCCTGCTGCTTTGACAACCAAAAAATATGGTATTAGCAAGAGAGAACTGTTGAGAGCTTGCACATCCAGGGAATTCTTGATTATGAAGAGGAATTCATTTGTCTATATTTTCAAAATGATCCAACTTATTATTGTGGCTTTTATAAGCATGACATTGTTTCTCCGAACTGAGATGTCGCGAAATACAGTAGAAGATGGGGGGATTTTCATGGGTGCCCTTTTCTTTGCAGTCTTGAGGATTATGTTCAATGGATTAACAGAGCTTCCCATGACCATCTTCCAACTTCCAGTCTTTTACAAGCAAAGGGGCCTTCTCTTCTTTCCCTCCTGGGCATACTCTCTATCTAAATGGATCCTCAAGATGCCAATCGCATTTGCTGAAGTTGGCGCCTGGGTGATCATGACTTATTATGTCATAGGCTTTGATCCAAACATAGAAAGGTTCTTCAAGCAATATTTGCTACTGCTATGCATTCACCAGATGGCTTCAGGACTTCTTCGGTTGATGGCGGCATTGGGAAGGAACATCATAGTTGCAAGCACATTTGGCTCATTTCCATTACTTCTAGTAGTGGTTTTGGGTGGATTTGTCTTGTCAAAAGATGATGTGAAGCCATGGTGGGAATGGGGTTATTGGGTCTCACCTTTGATGTATGGGCAGAATGCCATAAGTGTGAATGAATTCCTTGGGAACAGCTGGAGACATGTTCCGGCTAACTCAACAGAATCATTAGGAGTACTAGTCTTGAAAGCTCGTGGGGCTTTCACAGAACCACACTGGTATTGGCATTTGGGAAGCCTCAACCAATTCTATCCAAGGAGACCTTAA 2415 43.19 MLKNTYQNQCQTHSYSVHIEEIISLAKNSLTKQSVLWNRLVPMESSDISRVTSVRITASNILRNSSVEVFSRSSREEDDEEALKWAALEKLPTFLRIQRGILTEEKGQAREIDIKSLGLRERKNLIQRLVKIDGHDNEKFLLKLKERIDRVGLDSPTVEVRFEHLTVDAEAYVGSRALPTIFNISANILEGFLNYLHILPSRKKPFSILHDVSGIIKPRRMALLLGPPSSGKTTLLLALAGRLGSDLKVSGRVTYNGHGMDEFVPQRTSAYTSQYDLHAGEMTVRETLDFSARCQGGGGLSDMLAELSRREKAANIKPDPDIDIYMKAAALEGQKTSVVTEYMLKILGLEICADTLVGDVMKRGISGGQKKRLTTGEILVGPARALFMDEISTGLDSSTAFQIVNSLRQSIHMLNGTALISLLQPAPETYNLFDDIILLSDGKIVYQGPCENVLEFFGYMGFKCPERKGVADFLQEVTSRKDQEQYWARKDEPYSYVTVKEFAEAFQSFHIGQKLGDELAVPFDKTKGHPAALTTKKYGISKRELLRACTSREFLIMKRNSFVYIFKMIQLIIVAFISMTLFLRTEMSRNTVEDGGIFMGALFFAVLRIMFNGLTELPMTIFQLPVFYKQRGLLFFPSWAYSLSKWILKMPIAFAEVGAWVIMTYYVIGFDPNIERFFKQYLLLLCIHQMASGLLRLMAALGRNIIVASTFGSFPLLLVVVLGGFVLSKDDVKPWWEWGYWVSPLMYGQNAISVNEFLGNSWRHVPANSTESLGVLVLKARGAFTEPHWYWHLGSLNQFYPRRP* 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4265751 4286094 + Vvi4g420 Vvi4g420 785199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g420 804 Gene3D - 196 506 IPR027417 -
Vvi4g420 804 Pfam ABC-2 type transporter 424 477 IPR043926 GO:0140359
Vvi4g420 804 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 43 791 - -
Vvi4g420 804 Pfam ABC transporter 209 391 IPR003439 GO:0005524
Vvi4g420 804 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 193 466 IPR003439 GO:0005524
Vvi4g420 804 Pfam ABC-transporter N-terminal 122 184 IPR029481 -
Vvi4g420 804 PANTHER ABC TRANSPORTER G FAMILY MEMBER 39-LIKE ISOFORM X2 43 791 - -
Vvi4g420 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 466 IPR027417 -
Vvi4g420 804 SMART AAA_5 218 443 IPR003593 -
Vvi4g420 804 Pfam Plant PDR ABC transporter associated 762 791 IPR013581 -
Vvi4g420 804 Pfam ABC-2 type transporter 545 757 IPR013525 GO:0016020|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g420 K08711 PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR - vvi:100245568 1405.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g420 Vvi9g443 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000210 5 7 7 8 5 5 5 4 4 5 4 4 6 5 5 6 4 7 6 3 5 6 5 7 7 5 6 9 8 14 177