Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g421 ATGAGCTCAAGAATTCAAAGTGGATCATCCAGGTCATTGAAAAGGGGAATGGTTCTTCCTTTCGAACCTCTGTCTATCTCTTTTGATGAAATCAGATATGCAGTGGACATGCCACAGGAAATGAAAGCACAAGGCGTCACTGAGGACAGATTGGAACTTCTGAAAGGCGTGAGCGGTTCATTCAGGCCAGGAATCCTTACAGCCCTAATGGGTGTTACCGGTGCTGGAAAAACCACTCTGATGGATGTATTGGCTGGAAGAAAAACCAGTGGATATATTGAAGGAATTATCAAACAAACTGATATCCACTCTCCTCACGTTACAGTCTATGAGTCCTTGATTTATTCTGCATGGCTTCGGTTACCTTCTGAAGTCGATTCGGCAACCAGGAAGATGTTCATTGAGGAGGTTATGGAGCTTGTGGAACTAAACTCATTGAGGGAAGCACTTGTTGGATTGCCCAGTGAAAATGGTCTGTCAACAGAGCAGCGCAAGAGACTGACCATTGCAGTTGAGCTTGTTGCCAACCCATCTATAATATTCATGGATGAGCCAACATCTGGGCTTGATGCCAGGGCAGCAGCAATAGTGATGAGAACAGTGAGGAACACAGTGGACACAGGAAGAACTGTAGTGTGCACCATCCACCAGCCAAGCATAGATATATTTGATGCCTTTGATGAGCTACTTCTCTTGAAACGGGGAGGTGAAGAAATTTACACAGGCCCAATAGGTCACCATTCTTCCCATCTGATCAAGTACTTTGAGGGAATTAATGGAATTAGTAAGATTAAAGATGGCTATAACCCATCAACTTGGATGTTAGAGTTGACTTCGGCAGCACAAGAGGCAGCTCTAGGAGTGAACTTCACTGAAGAATACAAGAACTCTGAACTGTATAGGAGAAACAAGGCACTGATCAAGGAACTGAGTTCACCCCCTCCAGGGTCAAAAGACCTTTACTTCTCAACTCAATATTCACAATCTTTCTTCACACAATGTTTGGCTTGCCTATGGAAACAGCACTGGTCATATTGGAGAAACCCAGCATACACTGCCGTGAGATTGTTCTTCACAACCTTCATAGCTTTAATGTTTGGGACAATATTCTGGGATTCTGGCTCCAAAAGGAAAAGGCAACAGGATCTCTTCAATGCAATGGGTTCTATGTATGTTTCAGTTATCTTCATTGGGATACAAAATGCTTTCTCTGTACAGGCAGTTGTAGCCATTGAGAGAACAGTCTTTTACAGAGAAAGAGCAGCTGGAATGTATTCAGCTTTCCCATATGCCTTTGGACAGGTTATGATTGAGCTCCCACACATATTCATCCAAACCATCATCTTTGGACTTATAGTATATGCCATGGTTGGGTTTGAGTGGACAGTCACTAAATTCTTCTGGTATCTTTTCTTCATGTACTTCACCTTCTTATACTTCACATTCTATGGGATGATGGCAGTAGCCATTACTCCTAACCAACACATCTCCGGCATAGTTTCCTCTGCTTTCTATGGATTATGGAACCTCTTCTCGGGATTCATCATTCCTCACACAAGGATTCCAGTGTGGTGGAAATGGTACTTCTGGTCATGTCCGGTGTCTTGGACTTTGTATGGATTGGTTGTCACACAATTTGGGGACATAAAGGAGAGGCTTGAGAGTGGGGAAAGAGTAGAAGATTTCGTAAGGAGCTACTTTGGGTATAGAAATGACTTTGTGGGAGTTGTTGCAGGCATTGTAGTTGGGATAACTGTGCTGTTTGGATTCATCTTCGCCTACTCAATCAGGGCTTTTAACTTCCAGAAAAGATGA 1815 43.2 MSSRIQSGSSRSLKRGMVLPFEPLSISFDEIRYAVDMPQEMKAQGVTEDRLELLKGVSGSFRPGILTALMGVTGAGKTTLMDVLAGRKTSGYIEGIIKQTDIHSPHVTVYESLIYSAWLRLPSEVDSATRKMFIEEVMELVELNSLREALVGLPSENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYTGPIGHHSSHLIKYFEGINGISKIKDGYNPSTWMLELTSAAQEAALGVNFTEEYKNSELYRRNKALIKELSSPPPGSKDLYFSTQYSQSFFTQCLACLWKQHWSYWRNPAYTAVRLFFTTFIALMFGTIFWDSGSKRKRQQDLFNAMGSMYVSVIFIGIQNAFSVQAVVAIERTVFYRERAAGMYSAFPYAFGQVMIELPHIFIQTIIFGLIVYAMVGFEWTVTKFFWYLFFMYFTFLYFTFYGMMAVAITPNQHISGIVSSAFYGLWNLFSGFIIPHTRIPVWWKWYFWSCPVSWTLYGLVVTQFGDIKERLESGERVEDFVRSYFGYRNDFVGVVAGIVVGITVLFGFIFAYSIRAFNFQKR* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4286127 4295628 + Vvi4g421 Vvi4g421 785200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g421 604 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 604 - -
Vvi4g421 604 Pfam ABC-2 type transporter 216 276 IPR043926 GO:0140359
Vvi4g421 604 Pfam ABC transporter 54 187 IPR003439 GO:0005524
Vvi4g421 604 Pfam ABC-2 type transporter 332 546 IPR013525 GO:0016020|GO:0140359
Vvi4g421 604 Gene3D - 40 252 IPR027417 -
Vvi4g421 604 SMART AAA_5 63 236 IPR003593 -
Vvi4g421 604 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 604 - -
Vvi4g421 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 244 IPR027417 -
Vvi4g421 604 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 259 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g421 K08711 PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR - vvi:100245568 1127.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g421 Vvi9g447 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g421 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000210 5 7 7 8 5 5 5 4 4 5 4 4 6 5 5 6 4 7 6 3 5 6 5 7 7 5 6 9 8 14 177