Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g423 ATGTATGGGGAACGGTCTCCTACAACGCAGCAAGTACTCCTTGCTGACATGTCAGCCACAACCTATGATCGTCTCAAACTCCACCTTCCCAAACAGTTTTGTGAACTCCCACTGTATCGCTTCCCTGAAGATTTTCCCAAGTACCCAACAAAGCAGCAGTTCATATCATACATGGAGTCTTATGCTTCCCACTTTTCAATCCACCCCAGGTTCAAGCAACAAGTTCAAAGAGCTTATTTTGATCCAAGCTGCAAGCTATGGAAGGTTCAAACTCAGGATTTTGAGTACATCTCTCGCTGGCTTATTGTTGCCACTGGCGAAAATGCTGAACCTCTAATACCTGAAATTCTGGGCCTTGAGAGGTTCCGTGGACGGGTTGTTCATACCAGTGTGTATAAGTCCGGGTCTGATTTCAGAAACCAGAGGGTTTTGGTTGTTGGTTGCGGCAATTCCGGCATGGAAGTGAGCTTGGACCTCTGTAGATATAATGCCAGCCCTCATATCGTGGTTAGAAACACTGTGCATGTTCTACCTAGAGAGATGTTTGGCTTGTCAACATTTGGAGTAGCCATGGCACTTCTCAAATGGCTTCCACTGAGACTAGTAGACAAGTTCCTCTTACTAGTAGCCAACTTCACCCTGGGCAACACCGACCACTTAGGCCTCCGGAGGCCCAAAACCGGACCAATTGAGCTCAAAAATGCCACCGGAAAAACCCCAGTACTGGATGTAGGAGCCCTCTCGCAGATAAAATCCGGCAAAATCAAGGTGATGGAAGGTGTGAGAGAGATAACAAGAAATGGAGCCAAGTTTCTGGACGGTCAGGAAAAAGAATTCCATTCAATAATCTTAGCAACAGGGTACAAGAGCAATGTTCCAAGTTGGCTAAAGAGTGGCGACTTTTTCACACAAGATGGGGGGATGCCCAAAACGCCATTTCCTAACGGTTGGAAGGGAGGGGATGGATTGTACACAGTTGGGTTTACGAGAAGGGGGCTCCTGGGAACGGCGTCCGACGCAGTCAATATCGCCCGGGACATAGCTGAGCAGTGGAGGACATTTAATGCCACCAACAATATATGTAATACCCATGTTATCCTTAGAAGAAAACCATAG 1116 47.13 MYGERSPTTQQVLLADMSATTYDRLKLHLPKQFCELPLYRFPEDFPKYPTKQQFISYMESYASHFSIHPRFKQQVQRAYFDPSCKLWKVQTQDFEYISRWLIVATGENAEPLIPEILGLERFRGRVVHTSVYKSGSDFRNQRVLVVGCGNSGMEVSLDLCRYNASPHIVVRNTVHVLPREMFGLSTFGVAMALLKWLPLRLVDKFLLLVANFTLGNTDHLGLRRPKTGPIELKNATGKTPVLDVGALSQIKSGKIKVMEGVREITRNGAKFLDGQEKEFHSIILATGYKSNVPSWLKSGDFFTQDGGMPKTPFPNGWKGGDGLYTVGFTRRGLLGTASDAVNIARDIAEQWRTFNATNNICNTHVILRRKP* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4330632 4333507 + Vvi4g423 Vvi4g423 785202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g423 371 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 19 367 - -
Vvi4g423 371 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 19 367 - -
Vvi4g423 371 SUPERFAMILY FAD/NAD(P)-binding domain 88 354 IPR036188 -
Vvi4g423 371 SUPERFAMILY FAD/NAD(P)-binding domain 19 176 IPR036188 -
Vvi4g423 371 Pfam Flavin-binding monooxygenase-like 31 293 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi4g423 371 Gene3D - 6 355 IPR036188 -
Vvi4g423 371 PRINTS Pyridine nucleotide disulphide reductase class-II signature 99 107 - -
Vvi4g423 371 PRINTS Pyridine nucleotide disulphide reductase class-II signature 138 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g423 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - vvi:100249017 723.391
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g423 Vvi11g343 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g423 . . . . Bpe02g01231 . . . Cmo05g00687 Cmo12g00265 . Cma05g00655 . Car12g00294 . . . . . . . . . . . . . . . . . . . . . . . . Cme03g01659 . . . . . . . . . . . . Cma12g00313 . . Cpe11g00582 . . . . . . . . . . . . . . . Lsi08g01158 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007846 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36