Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g425 ATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTAGATGTCTACATCCATGATTATTTAGTGAAGAGGGATTTAAAGGCATCTGCTCAGGCCTTTCAAGCTGAGGGGAAAGTATCATCTGATCCTGTTGCTATTGATGCTCCGGGTGGTTTTCTATTCGAATGGTGGTCGGTTTTTTGGGATATATTCATTGCTAGGACTAATGAAAAACACTCAGAGGTTGCTGCATCTTATATTGAGATAGAAATGATAGATGCAGTCTTAAAGACCCGTGCACACCTTTTTCCTGCATTGTTAGCCAAATTGTTTCTGAAATTTCAGATGAAACTTCTACTTCCTCTTCATAACTCTGGCTGGTTCATGTATTTGCATGGGTCACTAGTATTCATCATTTTCTTAAGGACTCTTAATCCACTGTCACTCATGGCTTGCTTACTTGCTTCAATTAAGGAGACTGGGGACTTCCCAAGAAATAGGATCCATTACTTCATGAAAAGGTCCTCGTTGTTGGTTCATGTGCAAAATGAGCAAACCTTACCCCTTACTCAATTAATTAAAGCAAGGGAACAACAACAACAGCAACAGCAGCAACAACAGCAACCCCAACAACCACAGCATCAACAACAACAACAGCAGCAGCAACAATTGCAGATGCAACAGCTCAACCCCAGCAACAGCAACGTAGAGATGGTGCCCATCTCTTAA 705 41.28 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEIEMIDAVLKTRAHLFPALLAKLFLKFQMKLLLPLHNSGWFMYLHGSLVFIIFLRTLNPLSLMACLLASIKETGDFPRNRIHYFMKRSSLLVHVQNEQTLPLTQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQLNPSNSNVEMVPIS* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4366916 4370044 + Vvi4g425 Vvi4g425 785204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g425 234 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 94 IPR044716 GO:0003714
Vvi4g425 234 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vvi4g425 234 SMART Lish 8 40 IPR006594 GO:0005515
Vvi4g425 234 MobiDBLite consensus disorder prediction 194 234 - -
Vvi4g425 234 Pfam LisH 10 36 IPR006594 GO:0005515
Vvi4g425 234 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g425 - - - ath:AT4G32551 172.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021275 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14748 PF08513 LisH 2.60E-07 CL0561 Vvi TR