Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g426 ATGCGGACAAATCCTGCCACTGCCAATGCTTTGGCTACAAAGATGTATGAGGAGAGGTTAAAATTGCCAATTCAGCGGGATTCTTTGGATGATGCAACAATGAAGCAAAGATTTAGTGAGAATGTGGGCCAGCTTTTGGATCCAAATCATGCCACAATATTGAAGTCTGCTGCAGCAGCTGGCCAGCCTTCAGGGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCGGATATAAAGAGTGAGATGAATCCAGTGTTGAACCCCAGAGCTGGTGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTGGTAACAATTTGACCCTGAAAGGATGGCCGCTCACGGGATTGGATCAACTTCGCTCTGGGCTACTTCAGCAGCCAAAACCTTTCATCCAAGCTGCTCCTCAGCCCTTTCATCAGCTCCAGATGCTACCACAACACCAGCAACAGCTTTTGCTTGCACAACAAAGTTTGACATCCCCTCCCAGTGATGAAAGCAGAAGGCTGAGAATGCTTCTGAATAATCGGAATATGAATCTTGGGAAGGACGGTCCTTCAAATTCCATTGGTGATGTTCCAAATGTTGGCTCACCCCTGCAACCCGGTTGCGCTGTTTTGCCTCGTGGAGATACTGAGATGCTAATGAAGTTAAAAATGGCCCAAATGCATCATCAGCAGCAACAACAACAGCAGCAGCAACAAAACAGTAATCAACCACAGCAGCAGCAGCAACAGCAGCTTCAGCAGCATGCGCTCTCAAGTCAGCAATCTCAGAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGCAGCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGGCTTCAAAAAACCAGACTGGAAGAAAGAGAAAGCAGCCTGTTTCATCTTCTGGTCCAGCCAATAGCTCAGGAACTGCAAACACAGCAGGACCCTCCCCAAGCTCAGCACCCTCTACACCGTCAACTCACACACCTGGAGATGTGATCTCAATGCCTGCTTTGCCACACAGTGGTAGCTCTTCAAAGCCATTGATGATGTTCAGCACTGATGGTACTGGAACTCTTACATCACCGTCAAATCAGTTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTGGAAGATGGTTCCCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGTTGTATGGATGTCAGTAAAGGGTTTACATTTACGGAAGTCAGCTCCGTTAGAGCGAGTGCAAGTAAAGTTATCTGTTGCCACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAGATGGTGAGATACGATACTGGAATATTAAGAACGGTAGCTGTGCAAGGGTATTCAAGGGTGGTACGGCCCAAATGAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCGATACTGGACGTGGAGACACAAGCTTGTCGGCATTCATTACAGGGACATACAAAACCAATTCATTCTGTCTGCTGGGATCCTTCTGGTGAGTTCTTGGCATCTGTAAGTGAGGATTCTGTCAGAGTTTGGACGCTTGGATCAGGAAACGAAGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCTCATGATGGACTAATAGCTGCCTTGGCTGTATCAACTGTGTCTGGCTTGGTTGCTTCAGCTAGCCATGACAAGATTGTCAAGCTCTGGAAGTGA 2205 45.8 MRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPNHATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPEGSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQLLLAQQSLTSPPSDESRRLRMLLNNRNMNLGKDGPSNSIGDVPNVGSPLQPGCAVLPRGDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRFQPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVSGLVASASHDKIVKLWK* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4370043 4384297 + Vvi4g426 Vvi4g426 785205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g426 734 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 3 734 - -
Vvi4g426 734 Gene3D - 585 734 IPR015943 GO:0005515
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 734 - -
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 527 - -
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 577 IPR001680 GO:0005515
Vvi4g426 734 CDD WD40 446 734 - -
Vvi4g426 734 SMART WD40_4 571 607 IPR001680 GO:0005515
Vvi4g426 734 SMART WD40_4 485 524 IPR001680 GO:0005515
Vvi4g426 734 SMART WD40_4 528 568 IPR001680 GO:0005515
Vvi4g426 734 SMART WD40_4 654 693 IPR001680 GO:0005515
Vvi4g426 734 SMART WD40_4 443 482 IPR001680 GO:0005515
Vvi4g426 734 SMART WD40_4 695 734 IPR001680 GO:0005515
Vvi4g426 734 SMART WD40_4 610 648 IPR001680 GO:0005515
Vvi4g426 734 MobiDBLite consensus disorder prediction 240 289 - -
Vvi4g426 734 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Vvi4g426 734 Pfam WD domain, G-beta repeat 532 568 IPR001680 GO:0005515
Vvi4g426 734 Pfam WD domain, G-beta repeat 450 481 IPR001680 GO:0005515
Vvi4g426 734 Pfam WD domain, G-beta repeat 612 647 IPR001680 GO:0005515
Vvi4g426 734 Pfam WD domain, G-beta repeat 489 524 IPR001680 GO:0005515
Vvi4g426 734 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 734 IPR044716 GO:0003714
Vvi4g426 734 ProSitePatterns Trp-Asp (WD) repeats signature. 511 525 IPR019775 -
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 533 IPR001680 GO:0005515
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 734 IPR001680 GO:0005515
Vvi4g426 734 SUPERFAMILY WD40 repeat-like 445 734 IPR036322 GO:0005515
Vvi4g426 734 Gene3D - 426 584 IPR015943 GO:0005515
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 573 - -
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 657 IPR001680 GO:0005515
Vvi4g426 734 MobiDBLite consensus disorder prediction 296 356 - -
Vvi4g426 734 MobiDBLite consensus disorder prediction 238 376 - -
Vvi4g426 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 491 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g426 - - - vvi:100266189 1324.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g426 Vvi11g402 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53