Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g428 ATGTCTCAGGAGGCATTTGAATATCAACTGTGGAGGAAGGACGGGGGTTGCAGGCGGTGCTGGTGGTGGGCCAGCAAAAGTGACTGTGGATGGGACAGAGAAAGGTGGTGCCGGCCGATGGAACCACGTGCGTCGAGGGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAGAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTATCTGTTGCCAATTCTCATCAGATGGAAAACTGCTTGCTAGTGGCGGCCATGATAAAAAGGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCTGCGTCTTGCAACATCTTCATTGGACAAAACCGTCAGGGTTTGGGATGCTGACAGTACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATACAGATGATCTCATCTGCTCTTGTGATGGAGATGGTGAGATACGATACTGGGTTATTAAGAACGCTTGCTGTGCAAGGGTATTCAAGGGTGGTATAGTCCAAATTAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCAATACTGGATGTGGAGACACAAGCTTGTCGGCATTCATTACAGGGACATACGGAACCAATTCATTCTGTCTGCTGGGATCCTTCTGGTGAGTTCTTGGCATCAGTAAGTGTGGATTCTATCAGAGTTTGGACGCTTGGGTCAGGAAACGAAGGGGAGTGCGTTCATGAGTTGAGTTGTAATGACAAGAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCTCATGATGGACTAATAGCTGCCTTGGCTGTATCAACTGTGTCTGGCTTGGTTGCTTCAGCTAGCCATGACAAGATTGTCAAGCTCTGGAAGTGA 1071 46.97 MSQEAFEYQLWRKDGGCRRCWWWASKSDCGWDRERWCRPMEPRASRGWQQADRGSPTSLMHPEFTFTEVSSVQASTSKVICCQFSSDGKLLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMLRLATSSLDKTVRVWDADSTSYSLRTFTGHSASVMSLDFHPNTDDLICSCDGDGEIRYWVIKNACCARVFKGGIVQIRFQPRHGRYLAAAAENVVSILDVETQACRHSLQGHTEPIHSVCWDPSGEFLASVSVDSIRVWTLGSGNEGECVHELSCNDKKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVSGLVASASHDKIVKLWK* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4389208 4409630 + Vvi4g428 Vvi4g428 785207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 114 149 - -
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 356 - -
Vvi4g428 356 Gene3D - 31 198 IPR015943 GO:0005515
Vvi4g428 356 Gene3D - 199 356 IPR015943 GO:0005515
Vvi4g428 356 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 62 356 IPR044716 GO:0003714
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 189 IPR001680 GO:0005515
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 356 IPR001680 GO:0005515
Vvi4g428 356 SMART WD40_4 276 315 IPR001680 GO:0005515
Vvi4g428 356 SMART WD40_4 193 229 IPR001680 GO:0005515
Vvi4g428 356 SMART WD40_4 232 270 IPR001680 GO:0005515
Vvi4g428 356 SMART WD40_4 317 356 IPR001680 GO:0005515
Vvi4g428 356 SMART WD40_4 107 146 IPR001680 GO:0005515
Vvi4g428 356 SMART WD40_4 150 190 IPR001680 GO:0005515
Vvi4g428 356 SMART WD40_4 65 104 IPR001680 GO:0005515
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 114 155 IPR001680 GO:0005515
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 189 - -
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 265 IPR001680 GO:0005515
Vvi4g428 356 PANTHER PROTEIN, PUTATIVE-RELATED 62 356 - -
Vvi4g428 356 ProSitePatterns Trp-Asp (WD) repeats signature. 133 147 IPR019775 -
Vvi4g428 356 PRINTS G protein beta WD-40 repeat signature 91 105 IPR020472 -
Vvi4g428 356 PRINTS G protein beta WD-40 repeat signature 133 147 IPR020472 -
Vvi4g428 356 PRINTS G protein beta WD-40 repeat signature 343 356 IPR020472 -
Vvi4g428 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 113 IPR001680 GO:0005515
Vvi4g428 356 CDD WD40 68 356 - -
Vvi4g428 356 Pfam WD domain, G-beta repeat 111 146 IPR001680 GO:0005515
Vvi4g428 356 Pfam WD domain, G-beta repeat 154 189 IPR001680 GO:0005515
Vvi4g428 356 Pfam WD domain, G-beta repeat 319 356 IPR001680 GO:0005515
Vvi4g428 356 Pfam WD domain, G-beta repeat 77 103 IPR001680 GO:0005515
Vvi4g428 356 Pfam WD domain, G-beta repeat 234 265 IPR001680 GO:0005515
Vvi4g428 356 SUPERFAMILY WD40 repeat-like 64 356 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g428 - - - vvi:100245608 655.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g428 . . . . . . . . . . . . . . . . . Bhi04g01021 Tan02g2683 . . . . . . . . . . . . . . . . . . . . . . Bda01g00984 . Bpe14g00568 . . . . . . . . . Car05g00599 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53