Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g43 ATGATGATCGGAGAGCCAACTCGATCCAATCCGACGGTGCAGGTTCCTCCGTGGGACCCTTACGATGATCCAACGGCTGGGATGGGTTCTCCGTTCCCAGTTAGTGGAGCCTTCTCTTCACTGCAGCGTTACCTGCCATCAAACGAGTTCGGGACCGAGTCCGGCGATGAGTCGGAGACGGTGGTGGACGCGTTCTCATGCGATCAGTTTCGTATGTTTGAGTTTAAAGTGCGGAGGTGCGCACGTGGGAGGTCACATGACTGGACAGAGTGTCCGTACGCGCATCCTGGGGAAAAGGCTCGCCGGAGGGACCCCCGGAAGTTTCACTACTCTGGCACGGCGTGCCCGGAGTTTCGGAAAGGAAACTGCAAGAAGGGCGATTCATGCGAGTTTGCTCATGGCGTGTTCGAGTGCTGGCTCCACCCTGCTCGTTACCGGACTCAGCCTTGCAAGGATGGGTCCGGTTGCCGCCGGCGAGTATGTTTCTTTGCTCACACGCCGGAGCAGCTCCGGGTTCTTCCTCAGCAGAGTCCTAGGAATCATGGGTCGGCCGAGTCATACGACGGCTCACCTCTCCGACTCGCTTTTGACCCAAATCTACAAGTTGGGAAGGCGAAAATGAGCCCTCAATCATGGGGAGTCCAAATGGGATCCGGTTTCGGATCTCCTCGCGGCTCAACCCTGCGCCCAGGGTTCTGTAGCCTCCCTTCCACCCCCACTCGAACTCCGGCTCGCTCCGGACTCGGTGGCCTCGACGTCTGGGACAAGACTTGCGAGGAAGAGCCAGCAATGGAGAGGGTTGAGTCTGGAAGAGACTTGCGTGCAAGAATATACGCTAAAATCAGCAAAGAAAACTCACTGGATCGAGACTCGTCCCCCTCTGCCCCTGACTTTGGCTGGGTCTCAGAGCTGGTGAAGTGA 921 57.65 MMIGEPTRSNPTVQVPPWDPYDDPTAGMGSPFPVSGAFSSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRRRVCFFAHTPEQLRVLPQQSPRNHGSAESYDGSPLRLAFDPNLQVGKAKMSPQSWGVQMGSGFGSPRGSTLRPGFCSLPSTPTRTPARSGLGGLDVWDKTCEEEPAMERVESGRDLRARIYAKISKENSLDRDSSPSAPDFGWVSELVK* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 541013 542532 + Vvi4g43 Vvi4g43 784822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g43 306 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 190 - -
Vvi4g43 306 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 198 306 - -
Vvi4g43 306 Gene3D - 109 173 - -
Vvi4g43 306 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 134 IPR000571 GO:0046872
Vvi4g43 306 MobiDBLite consensus disorder prediction 1 26 - -
Vvi4g43 306 SMART c3hfinal6 109 135 IPR000571 GO:0046872
Vvi4g43 306 SMART c3hfinal6 144 167 IPR000571 GO:0046872
Vvi4g43 306 MobiDBLite consensus disorder prediction 284 306 - -
Vvi4g43 306 ProSiteProfiles Zinc finger C3H1-type profile. 110 136 IPR000571 GO:0046872
Vvi4g43 306 PANTHER UNKEMPT FAMILY MEMBER 198 306 IPR045234 -
Vvi4g43 306 PANTHER UNKEMPT FAMILY MEMBER 7 190 IPR045234 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g43 Vvi11g238 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14749 PF00642 zf-CCCH 3.90E-06 CL0537 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g43 - - vvi:100247549 600.897