Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g431 ATGGCTTCTACTCTTTCCCAAGTCTTTAGGGACAACCCTCTCCCCCTCAACCATATCATCCCCCTGGACTTCACCTCCGTTCATTCTCTACCTGAATCTCACGTGTGGCCTGCTTTTGATGGTTTCCCATTTGGGACCACTTACCCTGGCGAAAAGTTCTCCATACCCATCATCGACCTTATGGACCCCAATGCTGCTCAGCTTGTTGGCCATGCATGTGAGAAATGGGGAGCCTTTCAACTTACTAGCCATGGCCTCCCATCTATACTTACCGATGATGTTGAGTCTCAGACTCGACGGCTCTTCGCTCTCCCTGCTCATGAGAAGATGAAGGCCTTACGCCTCCCCAGTGGAGGCACCGGCTACGGCCAAGCTCGGATATCACCGTTCTATCCCAAGTTCATGTGGCATGAAGGCTTCACGATCATGGGGTCTGCAGTTGATCATGCTAGAAAGCTTTGGCCTGATGACTACAAAGGGTTTTGCGATGTCATGGAAGATTATCAGAAGAAGATGAAGGAACTTGCAGAGAGTCTCTTACATATATTTCTAGAATCATTGGACATCTCCAAGGAAGAGTACCGGTCGACTACAATTCAGCGTGGCCGCGAGGCCTGCAATACTGCACTGCAGCTGAATTCATATCCTCCATGCCCGGACCCTAACCGAGCCATGGGGCTAGCCCCACATACAGACTCATTGCTATTCACTATCGTCCACCAAAGCCACACAAGCGGCCTCCAAATCTTGAGAGATGGAGTTGGGTGGATAACAGTGTTTCCTCTTGAAGGTGCACTTGTAGTCAATGTTGGAGATCTCCTCCATATTCTCTCTAATGGTCGGTACCCCAGTGTTCTTCACCGCGCAGTGGTGAACCAGGCGGAGCATCGGATATCCCTCGCATACTTCTATGGCCCTCCAGCTGATTCCCTGATTTCACCTCTCTGTAATCTTGTGAGTTCCGGCCAGCAAGTAGTGGCTCCTCGTTATAGATCAGTGTCTGTTAAGGAGTACGTTGATTTAAAGGAAAAGCACAAGGAGAAGGCACTCTCTTTGTTAAGATTATGA 1068 49.53 MASTLSQVFRDNPLPLNHIIPLDFTSVHSLPESHVWPAFDGFPFGTTYPGEKFSIPIIDLMDPNAAQLVGHACEKWGAFQLTSHGLPSILTDDVESQTRRLFALPAHEKMKALRLPSGGTGYGQARISPFYPKFMWHEGFTIMGSAVDHARKLWPDDYKGFCDVMEDYQKKMKELAESLLHIFLESLDISKEEYRSTTIQRGREACNTALQLNSYPPCPDPNRAMGLAPHTDSLLFTIVHQSHTSGLQILRDGVGWITVFPLEGALVVNVGDLLHILSNGRYPSVLHRAVVNQAEHRISLAYFYGPPADSLISPLCNLVSSGQQVVAPRYRSVSVKEYVDLKEKHKEKALSLLRL* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4431412 4432859 - Vvi4g431 Vvi4g431 785210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g431 355 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 349 - -
Vvi4g431 355 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 349 - -
Vvi4g431 355 Gene3D - 18 341 IPR027443 -
Vvi4g431 355 Pfam 2OG-Fe(II) oxygenase superfamily 210 306 IPR044861 -
Vvi4g431 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 306 IPR005123 -
Vvi4g431 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 156 IPR026992 -
Vvi4g431 355 SUPERFAMILY Clavaminate synthase-like 18 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g431 K04124 GA3ox; gibberellin 3beta-dioxygenase [EC:1.14.11.15] - vvi:100267924 729.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g431 Vvi9g427 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g431 . . . . . . . . Cmo05g00680 . . Cma05g00649 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01291 . . . . . . . . Cpe11g00573 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012840 1 1 0 2 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28