Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g433 ATGAAAGCGCTCTTCTTGCTCCCGAAGCATCGCTTTCTTCTCTCTCTCACTTCCCTCTTCCACACCAACCCTAACCCTAACCTTAATTTTCAAAGACCACCATTTCACAAGCTCATCAATAGGCCTCCATCATATCGCCATTGGGACCTGCCAATCCCCACTCTCAAGCAATCCCTAAACCCTAACCCTAACCCTAATTTTTCTCAGTCTGACTTCTCCACCATTTGCGCTCTTCTCACTGACCCCGCTCTCTCTTCCGGTGCGCCTCTCGAAGATGCTTTGAACCGGACAGGAATTAAGCCTTGTTCGGGTCTGTTGCAAGCCATTTTCAGCCATTTTGATGCATCTCCCAAGCCTTTGTTCACTCTCTTTCGCTGGGCTATGAAGCAGCCTGGGTTTGAATCCTCTATGACTCTCTTCAACTCCATGATCGATGTGCTTGCGAAATCGCGGGCTTTCGATTCCGCGTGGTTACTGGTGCTTGATCGTATAGAGGGTGGAGAGGAACCTGAATTGGTTTCGAGCAATACATTTGCAGTACTGATAAGGCGGTATGCTCGCGCAGGTATGACCTTATCTGCCATTCGGACATTTGAATTTGCATTTAGTTTAGATTCGATTAGGGACCGAGATTCAGAATGGAGTTTGTTTAAGATTCTATTGGATTCTCTCTGTAAGGAAGGGCATGTTAGAGTAGCTTCTGAATATTTTGATCAACAAAGAGGACTGGACCCGAGTTGGGTTCCTTCAATTCGAGTATATAATGTATTATTGAATGGTTGGTTTCGATCAAGGAAGCTCAAGCGTGCAGAGCAGCTTTGGAGAACGATGAAGAGGGAAAATGTGAAACCGACTGTTGTAACATACGGTACCCTTGTTGAAGGGTATTGCCGGATGCGACGTTCTGAGAAGGCAATTGAATTAGTGGGTGAGATGAGGGGGAAAGGAATTGAGCCAAATGTAATTGTATATAATCCAATAATTGATTCATTAGCAGAAGCAGGGAGGTTTAAGGAGGCGATGGGGATGATGGAACGATGTTTGGTTTCAGAGACAGGTCCCACTATTTCAACATACAATTCTTTAGTGAAGGGTTTTTGCAAGGCAGGAGATCTAGTAGGTGCGAGTAAGGTACTCAAGATGATGATTAGTAGGGGTTTTGACCCAACTCTGACAACTTATAATTACTTTTTTCGGTACTTCTCAAGATGTGGGAAAACTGAAGAGGGGATGAACCTTTATACCAAGATGATTGAATCTGGACATACCCCAGATCGGCTCACTTACCATCTGTTGATTAAGATGATGTGTGAGGAGGAAAGATTGGACTTGGCAGTGCAAGTTAGCAAGGAAATGAGAGCTAGGGGATGCGATTTGGACTTGGCTACAAGCACCATGCTGGTCCATTTACTGTGCAAAATGCATAGACTGGAAGAGGCTTTTGCAGAGTTTGAAGACATGATTCGAAGAGGAATTGTTCCTCAGTACCTTACTTTTGAGAGAATGAATAATGCACTAAGAAAACGAGGATTGACTGAAATGGCACGGAAATTATGTGATATGATGGCATCTGTCCCTCATTCATCAAAGTTACCAAATACATATTCTGGAGATGGAGATGCATCACGGGCAAGGAAAACAAGTATAATACAGAGGGCCGAAGCAATGTCTGATATTTTGAAGACTTGTAATGATCCGAGAGAACTTGTTAAACGTAGAAGTTCATTTGAAAATACTGTATTGGTTGCAGACCAGTTGATAGAGGATATCAAGAGAAGAGCTAACAAGACATGA 1794 43.48 MKALFLLPKHRFLLSLTSLFHTNPNPNLNFQRPPFHKLINRPPSYRHWDLPIPTLKQSLNPNPNPNFSQSDFSTICALLTDPALSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTEMARKLCDMMASVPHSSKLPNTYSGDGDASRARKTSIIQRAEAMSDILKTCNDPRELVKRRSSFENTVLVADQLIEDIKRRANKT* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4451359 4455011 - Vvi4g433 Vvi4g433 785212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g433 597 Gene3D Tetratricopeptide repeat domain 352 563 IPR011990 GO:0005515
Vvi4g433 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Vvi4g433 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vvi4g433 597 PANTHER LEAF PROTEIN-LIKE 85 594 - -
Vvi4g433 597 Pfam PPR repeat 464 492 IPR002885 -
Vvi4g433 597 Pfam PPR repeat 217 238 IPR002885 -
Vvi4g433 597 Pfam PPR repeat 428 457 IPR002885 -
Vvi4g433 597 Pfam PPR repeat family 354 399 IPR002885 -
Vvi4g433 597 Pfam PPR repeat family 249 298 IPR002885 -
Vvi4g433 597 Gene3D Tetratricopeptide repeat domain 206 348 IPR011990 GO:0005515
Vvi4g433 597 Gene3D Tetratricopeptide repeat domain 115 205 IPR011990 GO:0005515
Vvi4g433 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi4g433 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vvi4g433 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Vvi4g433 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vvi4g433 597 TIGRFAM PPR: pentatricopeptide repeat domain 287 321 IPR002885 -
Vvi4g433 597 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Vvi4g433 597 TIGRFAM PPR: pentatricopeptide repeat domain 358 390 IPR002885 -
Vvi4g433 597 TIGRFAM PPR: pentatricopeptide repeat domain 428 460 IPR002885 -
Vvi4g433 597 TIGRFAM PPR: pentatricopeptide repeat domain 465 494 IPR002885 -
Vvi4g433 597 TIGRFAM PPR: pentatricopeptide repeat domain 393 425 IPR002885 -
Vvi4g433 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 594 - -
Vvi4g433 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vvi4g433 597 Pfam PPR repeat 315 345 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g433 - - - vvi:100257656 1200.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g433 Blo01g01369 . . . . . . . . . Cma01g01524 . . . . . . . . . . . . . Cla05g01756 . Cec05g1882 . Clacu05g1862 Cmu05g1743 Cre05g1873 . . . . Lsi04g02154 . . . . . . . . . . . . Cmo01g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002447 1 3 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 4 3 2 60