Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g436 ATGGTGCATAGACGAAAGAGAGGCGGATTGCTGAGGGGAGGATGGTGTGGAGGAGGTGGCGAAGAAGAGGCCATTGAGCAGTTGTCAAGAGACGACGCAAGCCATTTCAGCGTCACAAGTGCTATTCTCCCTTCTCTTGGCGCACGTAGCAACCGCAGAATCAATCTCCGTCGCTTCATTGTCTCTCCTTTTGATGCCCGTTACAGACTCTGGGAGACATATCTGGTATTTCTGGTCTTCTATACAGCATGGGTATCTCCATTTGAGTTTGGATTCCTCGAAGAACCAAAGGGGCCTCTCTCCATTGCTGATAATGTAGTTAATGGGTTTTTTGCCATTGATATTATCTTGACCTTCTTTGTTGCCTACCTCGATAGATCTACTTACCTCCTCGTTGACAATCACAAGCTAATTGCTTGGAGATACACGAAAACATGGTTAGCCTTTGATGTCATTTCCACAATCCCTTCTGAACTTGCTCGGAAAATTTTGCCCAAACCTCTTAAAGAATATGGCTACTTCAATATGCTCCGTCTCTGGCGTCTCCGAAGAGTCAGTTCTATGTTTGCCAGATTGGAGAAAGATAGGAACTTTAACTACTTTTGGGTTCGATGTGCAAAGCTTATTTGTGTTACTCTATTTGCAGTTCACTGTGCTGGTTGCTTCTACTATCTCCTTGGTTCTCAACACGGTGACCCAAAGAAGACATGGCTTGGGTTGGTCATGGGGGACCTTAATACCCACAGTTTGTGGCAACGATACGTGACCTCAATGTACTGGTCAATCACCACTCTTACAACTACGGGCTATGGCGATTTGCATGCAGTGAATACAAGGGAGATGGTGTTTGACATCTTCTATATGCTCTTTAATCTTGGATTAACATCATATTTGATTGGGAATATGACCAACTTGGTTGTCCATGGTACCAGTCGAACTAGGAAATTTAGAGATAGTATTCAAGCTGCCTCAAGTTTTGCACTGAGGAATCAACTACCTGTACGCCTGCAAGATCAAATGCTTGCTCACTTGAGTTTGAGGCATAGAACAAACTCAGAAGGGCTGCAACAGCAAGAGACCCTAGAAGTCCTTCCTAAAGCCATTCGATCAAGTATTTCACACTATCTCTTCTACTCACTTGTGGACAAAGTGTACTTGTTTCGTGGTGTATCAAATGACTTACTTTTCCAACTGGTTTCAGAGATGAAGCCTGAGTATTTTCCTCCCAAAGAAGACATCATTTTGCAGAATGAAGCACCTACAGACTTGTATGTACTGGTTACTGGTGTTGTGGAGCTCATTGAACGCAGGAATGCGATAGAACAGGTTGTTGGAGAGATAAGGACAGGAGATGTCTGTGGTGAGATAGGTGTGCTTTGTTACAGGCCACAACTGTTCACGGCTAGGACCAAACGACTGTGTCAGCTGCTTCGTCTGAACCGTACTGCACTTCTAAATCTTGTTCAGGCAAACGTTGGAGATGGAGCAATAATCATAAACAATCTACTTCAGCATTTGAAAGAGCACAAAAACCCAGTAATGGAAGGAGTTTTGGCTGACATAGAGAGCATGCTAGCTCAGGGAAGAATGGAATTGCCTCTCAGTTTGTGTTTTGCAGTTTTGAGAGGAGATGATCTATTGTTGCATCAGTTGCTGAAACGTGGTTTGGATCCAAACGAATTAGACAGCAATGGACGAACTCCTCTGCATATTGCAGCGTCCAAAGGGAGAGAACAATGTGCACACCTGCTTCTTGAATATGGAGCAAACCCTAATGGCAAAGATTCAGAAGGAATTGTTCCTCTGTGGGATGCCATTTTGGAGAGAGATGAATCCATGATCAAACTACTCATGGACAATGGTGCGAAGATACCGCTAAGCAATGTGGGTCAGTATGCATGCACTGCTGTTGAACGAAATGACCTAGACTTGCTCAAAGACCTTGTTCGCTTTGGTGGGGACGTAACACATCCCAGTAGCTCTGGCACCACTGCACTTCATGCAGCAACCTCTGAAGCAAACATCGAAATAGTTAAGTTTCTGCTAGATCAAGGAGCTGATGTTGACAAGCTAGATAACGATGGGTGGACCCCAAGGACTTTGGCTGATCAACAGGGCCATGAAGAAATAAAAGTTCTGTTCCAAACCAAGCGGGAGACTAAAAAACTAACCCCTGTGCCAGCTACCAAGAAGCCAGGGGTCCCCTTCCTCGGGAAGTTCAAGAGCGACTCATATCTACAGCCCTTTCAGCATGATAGAGAATCAACAGGACTTGAGGTGTCATGGATAGATGATAACCGTCCAAGGCGAAGGGTCAACAATTTCAACAATTCACTCTTTGGGATCATGTCATCTGTCAATACACGTGAGAGAAAGGGCTTTATTCGATCTGCAGCCAGTTTTGCTACTTCCCCAAGACAAAGGGACTTTCCTGCTAGAGTGACACTTAGCTGCCCAGAAAAAGGTGAAGTAGCAGGGAAGCTGGTTCCTCTGCCACAGTCCCTTCAGGAGCTACTGGATATCGGTGCCAAAAAATTCAAGTTTTCTCCTACAAAAGTTGTAACCAAAGAAGGAGCAGAAGTTGAAGACATAGAGCTTATCAGAGATGGTGATCATCTCATTCTGGTGAGTGAGGATGGAGATGAAAATTCTAAGCAAGTAGAGGCTGGGACTAATTTGGATTCTCCCCCACACTAA 2697 44.68 MVHRRKRGGLLRGGWCGGGGEEEAIEQLSRDDASHFSVTSAILPSLGARSNRRINLRRFIVSPFDARYRLWETYLVFLVFYTAWVSPFEFGFLEEPKGPLSIADNVVNGFFAIDIILTFFVAYLDRSTYLLVDNHKLIAWRYTKTWLAFDVISTIPSELARKILPKPLKEYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLICVTLFAVHCAGCFYYLLGSQHGDPKKTWLGLVMGDLNTHSLWQRYVTSMYWSITTLTTTGYGDLHAVNTREMVFDIFYMLFNLGLTSYLIGNMTNLVVHGTSRTRKFRDSIQAASSFALRNQLPVRLQDQMLAHLSLRHRTNSEGLQQQETLEVLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKPEYFPPKEDIILQNEAPTDLYVLVTGVVELIERRNAIEQVVGEIRTGDVCGEIGVLCYRPQLFTARTKRLCQLLRLNRTALLNLVQANVGDGAIIINNLLQHLKEHKNPVMEGVLADIESMLAQGRMELPLSLCFAVLRGDDLLLHQLLKRGLDPNELDSNGRTPLHIAASKGREQCAHLLLEYGANPNGKDSEGIVPLWDAILERDESMIKLLMDNGAKIPLSNVGQYACTAVERNDLDLLKDLVRFGGDVTHPSSSGTTALHAATSEANIEIVKFLLDQGADVDKLDNDGWTPRTLADQQGHEEIKVLFQTKRETKKLTPVPATKKPGVPFLGKFKSDSYLQPFQHDRESTGLEVSWIDDNRPRRRVNNFNNSLFGIMSSVNTRERKGFIRSAASFATSPRQRDFPARVTLSCPEKGEVAGKLVPLPQSLQELLDIGAKKFKFSPTKVVTKEGAEVEDIELIRDGDHLILVSEDGDENSKQVEAGTNLDSPPH* 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4478871 4485156 - Vvi4g436 Vvi4g436 785215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g436 898 Pfam Ion transport protein 69 313 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi4g436 898 ProSiteProfiles cAMP/cGMP binding motif profile. 386 488 IPR000595 -
Vvi4g436 898 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Vvi4g436 898 SUPERFAMILY cAMP-binding domain-like 311 506 IPR018490 -
Vvi4g436 898 SMART cnmp_10 386 503 IPR000595 -
Vvi4g436 898 Gene3D - 70 307 - -
Vvi4g436 898 ProSiteProfiles Ankyrin repeat region circular profile. 661 693 - -
Vvi4g436 898 SUPERFAMILY Voltage-gated potassium channels 63 307 - -
Vvi4g436 898 ProSiteProfiles KHA domain profile. 813 893 IPR021789 -
Vvi4g436 898 CDD CAP_ED 386 491 IPR000595 -
Vvi4g436 898 Gene3D Jelly Rolls 351 512 IPR014710 -
Vvi4g436 898 PANTHER POTASSIUM CHANNEL AKT1 7 887 IPR045319 GO:0005249|GO:0006813
Vvi4g436 898 MobiDBLite consensus disorder prediction 877 898 - -
Vvi4g436 898 Gene3D - 532 716 IPR036770 -
Vvi4g436 898 Pfam Cyclic nucleotide-binding domain 405 490 IPR000595 -
Vvi4g436 898 ProSiteProfiles Ankyrin repeat profile. 564 596 IPR002110 GO:0005515
Vvi4g436 898 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Vvi4g436 898 ProSiteProfiles Ankyrin repeat region circular profile. 564 595 - -
Vvi4g436 898 PRINTS EAG/ELK/ERG potassium channel family signature 81 88 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g436 898 PRINTS EAG/ELK/ERG potassium channel family signature 104 114 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g436 898 PRINTS EAG/ELK/ERG potassium channel family signature 115 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g436 898 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g436 898 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g436 898 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g436 898 SUPERFAMILY Ankyrin repeat 536 714 IPR036770 -
Vvi4g436 898 SMART ANK_2a 564 593 IPR002110 GO:0005515
Vvi4g436 898 SMART ANK_2a 597 626 IPR002110 GO:0005515
Vvi4g436 898 SMART ANK_2a 531 560 IPR002110 GO:0005515
Vvi4g436 898 SMART ANK_2a 661 690 IPR002110 GO:0005515
Vvi4g436 898 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 7 887 - -
Vvi4g436 898 PRINTS Ankyrin repeat signature 565 580 IPR002110 GO:0005515
Vvi4g436 898 PRINTS Ankyrin repeat signature 677 691 IPR002110 GO:0005515
Vvi4g436 898 Pfam KHA, dimerisation domain of potassium ion channel 813 875 IPR021789 -
Vvi4g436 898 Pfam Ankyrin repeats (3 copies) 636 714 IPR002110 GO:0005515
Vvi4g436 898 Pfam Ankyrin repeats (3 copies) 536 625 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g436 Vvi11g420 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g436 K21867 - vvi:100242278 1733.38